Protein–RNA interactions for Protein: Q5NCC9

Trim58, E3 ubiquitin-protein ligase TRIM58, mousemouse

Predictions only

Length 485 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim58Q5NCC9 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim58Q5NCC9 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Trim58Q5NCC9 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim58Q5NCC9 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim58Q5NCC9 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim58Q5NCC9 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim58Q5NCC9 Gm10499-201ENSMUST00000174094 934 ntBASIC19.33■□□□□ 0.68
Trim58Q5NCC9 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC19.33■□□□□ 0.68
Trim58Q5NCC9 Gm17971-201ENSMUST00000190239 806 ntBASIC19.33■□□□□ 0.68
Trim58Q5NCC9 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC19.33■□□□□ 0.68
Trim58Q5NCC9 Umpk-ps-201ENSMUST00000211897 827 ntBASIC19.33■□□□□ 0.68
Trim58Q5NCC9 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC19.33■□□□□ 0.68
Trim58Q5NCC9 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim58Q5NCC9 Rps4l-201ENSMUST00000071745 943 ntBASIC19.33■□□□□ 0.68
Trim58Q5NCC9 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Trim58Q5NCC9 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Trim58Q5NCC9 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim58Q5NCC9 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Trim58Q5NCC9 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC19.33■□□□□ 0.68
Trim58Q5NCC9 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC19.33■□□□□ 0.68
Trim58Q5NCC9 Gm37500-201ENSMUST00000192059 1443 ntBASIC19.33■□□□□ 0.68
Trim58Q5NCC9 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim58Q5NCC9 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim58Q5NCC9 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim58Q5NCC9 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Trim58Q5NCC9 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim58Q5NCC9 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
Trim58Q5NCC9 Gm9768-201ENSMUST00000206007 2861 ntBASIC19.32■□□□□ 0.68
Trim58Q5NCC9 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trim58Q5NCC9 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim58Q5NCC9 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trim58Q5NCC9 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim58Q5NCC9 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Trim58Q5NCC9 Gm11453-201ENSMUST00000117318 1007 ntBASIC19.32■□□□□ 0.68
Trim58Q5NCC9 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC19.32■□□□□ 0.68
Trim58Q5NCC9 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Trim58Q5NCC9 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC19.32■□□□□ 0.68
Trim58Q5NCC9 Gm6376-201ENSMUST00000209407 580 ntBASIC19.32■□□□□ 0.68
Trim58Q5NCC9 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim58Q5NCC9 Efs-202ENSMUST00000227037 2540 ntBASIC19.32■□□□□ 0.68
Trim58Q5NCC9 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim58Q5NCC9 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC19.32■□□□□ 0.68
Trim58Q5NCC9 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim58Q5NCC9 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim58Q5NCC9 Gm18856-201ENSMUST00000178096 1374 ntBASIC19.32■□□□□ 0.68
Trim58Q5NCC9 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim58Q5NCC9 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim58Q5NCC9 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Trim58Q5NCC9 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim58Q5NCC9 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim58Q5NCC9 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Trim58Q5NCC9 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim58Q5NCC9 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Trim58Q5NCC9 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC19.31■□□□□ 0.68
Trim58Q5NCC9 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC19.31■□□□□ 0.68
Trim58Q5NCC9 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
Trim58Q5NCC9 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC19.31■□□□□ 0.68
Trim58Q5NCC9 Gm14780-201ENSMUST00000118387 2737 ntBASIC19.31■□□□□ 0.68
Trim58Q5NCC9 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Trim58Q5NCC9 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim58Q5NCC9 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Trim58Q5NCC9 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim58Q5NCC9 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim58Q5NCC9 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim58Q5NCC9 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim58Q5NCC9 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim58Q5NCC9 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim58Q5NCC9 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Trim58Q5NCC9 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim58Q5NCC9 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC19.3■□□□□ 0.68
Trim58Q5NCC9 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim58Q5NCC9 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim58Q5NCC9 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC19.3■□□□□ 0.68
Trim58Q5NCC9 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC19.3■□□□□ 0.68
Trim58Q5NCC9 Gm37153-201ENSMUST00000193637 231 ntBASIC19.3■□□□□ 0.68
Trim58Q5NCC9 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim58Q5NCC9 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim58Q5NCC9 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim58Q5NCC9 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim58Q5NCC9 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim58Q5NCC9 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
Trim58Q5NCC9 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trim58Q5NCC9 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trim58Q5NCC9 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim58Q5NCC9 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim58Q5NCC9 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trim58Q5NCC9 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC19.3■□□□□ 0.68
Trim58Q5NCC9 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trim58Q5NCC9 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim58Q5NCC9 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim58Q5NCC9 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
Trim58Q5NCC9 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim58Q5NCC9 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim58Q5NCC9 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trim58Q5NCC9 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trim58Q5NCC9 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim58Q5NCC9 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim58Q5NCC9 Gm37728-201ENSMUST00000195025 2292 ntBASIC19.29■□□□□ 0.68
Trim58Q5NCC9 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Trim58Q5NCC9 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC19.29■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms