Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Gm5161-201ENSMUST00000075243 853 ntBASIC14.92□□□□□ -0.02
Col9a1Q05722 Prl6a1-201ENSMUST00000091679 1093 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
Col9a1Q05722 Prl6a1-202ENSMUST00000091680 868 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col9a1Q05722 Gm8369-201ENSMUST00000079855 1374 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
Col9a1Q05722 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC14.92□□□□□ -0.02
Col9a1Q05722 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Col9a1Q05722 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col9a1Q05722 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col9a1Q05722 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col9a1Q05722 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col9a1Q05722 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC14.92□□□□□ -0.02
Col9a1Q05722 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col9a1Q05722 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Col9a1Q05722 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Col9a1Q05722 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col9a1Q05722 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Col9a1Q05722 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col9a1Q05722 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col9a1Q05722 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Col9a1Q05722 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Col9a1Q05722 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col9a1Q05722 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col9a1Q05722 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col9a1Q05722 Gm43289-201ENSMUST00000200537 1475 ntBASIC14.91□□□□□ -0.02
Col9a1Q05722 Mir692-1-201ENSMUST00000102263 109 ntBASIC14.91□□□□□ -0.02
Col9a1Q05722 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC14.91□□□□□ -0.02
Col9a1Q05722 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Col9a1Q05722 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col9a1Q05722 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col9a1Q05722 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Col9a1Q05722 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Col9a1Q05722 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC14.91□□□□□ -0.02
Col9a1Q05722 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Col9a1Q05722 Gm6013-201ENSMUST00000212264 699 ntBASIC14.91□□□□□ -0.02
Col9a1Q05722 Gm29787-201ENSMUST00000222129 849 ntBASIC14.91□□□□□ -0.02
Col9a1Q05722 Shd-206ENSMUST00000225145 998 ntBASIC14.91□□□□□ -0.02
Col9a1Q05722 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC14.91□□□□□ -0.02
Col9a1Q05722 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col9a1Q05722 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC14.91□□□□□ -0.02
Col9a1Q05722 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC14.91□□□□□ -0.02
Col9a1Q05722 Mir433-201ENSMUST00000093564 124 ntBASIC14.91□□□□□ -0.02
Col9a1Q05722 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Col9a1Q05722 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col9a1Q05722 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col9a1Q05722 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC14.91□□□□□ -0.02
Col9a1Q05722 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col9a1Q05722 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col9a1Q05722 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col9a1Q05722 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col9a1Q05722 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC14.91□□□□□ -0.02
Col9a1Q05722 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC14.91□□□□□ -0.02
Col9a1Q05722 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Col9a1Q05722 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col9a1Q05722 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
Col9a1Q05722 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col9a1Q05722 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
Col9a1Q05722 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col9a1Q05722 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col9a1Q05722 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC14.9□□□□□ -0.02
Col9a1Q05722 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col9a1Q05722 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col9a1Q05722 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col9a1Q05722 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col9a1Q05722 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Col9a1Q05722 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col9a1Q05722 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col9a1Q05722 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Col9a1Q05722 Gm24543-201ENSMUST00000103867 82 ntBASIC14.9□□□□□ -0.02
Col9a1Q05722 Gm11077-201ENSMUST00000111844 84 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Col9a1Q05722 Gm14740-201ENSMUST00000118538 1150 ntBASIC14.9□□□□□ -0.02
Col9a1Q05722 Gm24514-201ENSMUST00000174961 285 ntBASIC14.9□□□□□ -0.02
Col9a1Q05722 Gm16701-202ENSMUST00000180995 934 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col9a1Q05722 Mir7032-201ENSMUST00000185154 79 ntBASIC14.9□□□□□ -0.02
Col9a1Q05722 Gm43692-201ENSMUST00000198236 1062 ntBASIC14.9□□□□□ -0.02
Col9a1Q05722 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC14.9□□□□□ -0.02
Col9a1Q05722 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
Col9a1Q05722 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col9a1Q05722 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col9a1Q05722 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col9a1Q05722 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col9a1Q05722 Sun1-203ENSMUST00000100517 1522 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col9a1Q05722 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col9a1Q05722 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC14.9□□□□□ -0.02
Col9a1Q05722 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC14.9□□□□□ -0.02
Col9a1Q05722 Ncmap-201ENSMUST00000064481 1448 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
Col9a1Q05722 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col9a1Q05722 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col9a1Q05722 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col9a1Q05722 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
Col9a1Q05722 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col9a1Q05722 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col9a1Q05722 Gm42535-201ENSMUST00000197312 1399 ntBASIC14.89□□□□□ -0.03
Col9a1Q05722 Gm7669-201ENSMUST00000210184 1603 ntBASIC14.89□□□□□ -0.03
Col9a1Q05722 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col9a1Q05722 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
Col9a1Q05722 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Col9a1Q05722 Mir877-201ENSMUST00000104738 85 ntBASIC14.89□□□□□ -0.03
Col9a1Q05722 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Col9a1Q05722 Nr6a1os-201ENSMUST00000129089 645 ntTSL 2 BASIC14.89□□□□□ -0.03
Col9a1Q05722 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms