Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Lig3P97386 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Lig3P97386 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Lig3P97386 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
Lig3P97386 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Lig3P97386 Gm10584-201ENSMUST00000207036 2628 ntBASIC16.67■□□□□ 0.26
Lig3P97386 Gfra2-202ENSMUST00000227633 1480 ntBASIC16.67■□□□□ 0.26
Lig3P97386 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Lig3P97386 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Lig3P97386 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Lig3P97386 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Lig3P97386 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Lig3P97386 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Lig3P97386 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC16.67■□□□□ 0.26
Lig3P97386 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Lig3P97386 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Lig3P97386 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC16.67■□□□□ 0.26
Lig3P97386 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC16.67■□□□□ 0.26
Lig3P97386 Gm7507-201ENSMUST00000183053 1008 ntBASIC16.67■□□□□ 0.26
Lig3P97386 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC16.67■□□□□ 0.26
Lig3P97386 Gm8655-201ENSMUST00000221159 852 ntBASIC16.67■□□□□ 0.26
Lig3P97386 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Lig3P97386 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Lig3P97386 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC16.67■□□□□ 0.26
Lig3P97386 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Lig3P97386 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
Lig3P97386 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Lig3P97386 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Lig3P97386 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Lig3P97386 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Lig3P97386 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Lig3P97386 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lig3P97386 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lig3P97386 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lig3P97386 Gm15442-201ENSMUST00000117905 1527 ntBASIC16.66■□□□□ 0.26
Lig3P97386 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lig3P97386 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lig3P97386 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Lig3P97386 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Lig3P97386 Gm44616-201ENSMUST00000206417 1732 ntBASIC16.66■□□□□ 0.26
Lig3P97386 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Lig3P97386 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lig3P97386 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lig3P97386 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Lig3P97386 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Lig3P97386 Gm45546-201ENSMUST00000211053 2394 ntBASIC16.66■□□□□ 0.26
Lig3P97386 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Lig3P97386 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Lig3P97386 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lig3P97386 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lig3P97386 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lig3P97386 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC16.65■□□□□ 0.26
Lig3P97386 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Lig3P97386 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Lig3P97386 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lig3P97386 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lig3P97386 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC16.65■□□□□ 0.26
Lig3P97386 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lig3P97386 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lig3P97386 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
Lig3P97386 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lig3P97386 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC16.65■□□□□ 0.26
Lig3P97386 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC16.65■□□□□ 0.26
Lig3P97386 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC16.65■□□□□ 0.26
Lig3P97386 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC16.65■□□□□ 0.26
Lig3P97386 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC16.65■□□□□ 0.26
Lig3P97386 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
Lig3P97386 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
Lig3P97386 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lig3P97386 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lig3P97386 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lig3P97386 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Lig3P97386 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lig3P97386 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lig3P97386 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.26
Lig3P97386 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lig3P97386 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Lig3P97386 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lig3P97386 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
Lig3P97386 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC16.64■□□□□ 0.25
Lig3P97386 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lig3P97386 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Lig3P97386 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
Lig3P97386 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lig3P97386 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lig3P97386 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lig3P97386 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lig3P97386 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lig3P97386 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lig3P97386 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lig3P97386 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lig3P97386 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lig3P97386 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Lig3P97386 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Lig3P97386 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lig3P97386 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
Lig3P97386 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lig3P97386 Gm13127-201ENSMUST00000118978 1389 ntBASIC16.64■□□□□ 0.25
Lig3P97386 Gm5837-201ENSMUST00000191844 1369 ntBASIC16.64■□□□□ 0.25
Lig3P97386 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 46.1 ms