Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Gm44981-201ENSMUST00000205549 1943 ntBASIC15.14■□□□□ 0.01
Shox2P70390 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Shox2P70390 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Shox2P70390 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Shox2P70390 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC15.14■□□□□ 0.01
Shox2P70390 Trmt13-210ENSMUST00000198454 880 ntBASIC15.14■□□□□ 0.01
Shox2P70390 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Shox2P70390 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Shox2P70390 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC15.14■□□□□ 0.01
Shox2P70390 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Shox2P70390 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Shox2P70390 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Shox2P70390 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Shox2P70390 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Shox2P70390 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Shox2P70390 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Shox2P70390 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Shox2P70390 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Shox2P70390 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Shox2P70390 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shox2P70390 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shox2P70390 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Shox2P70390 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shox2P70390 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC15.13■□□□□ 0.01
Shox2P70390 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC15.13■□□□□ 0.01
Shox2P70390 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shox2P70390 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Shox2P70390 Gm27463-201ENSMUST00000183569 57 ntBASIC15.13■□□□□ 0.01
Shox2P70390 Gm8242-201ENSMUST00000193029 1420 ntBASIC15.13■□□□□ 0.01
Shox2P70390 Gm37179-201ENSMUST00000194862 823 ntBASIC15.13■□□□□ 0.01
Shox2P70390 Gm7556-201ENSMUST00000201178 1084 ntBASIC15.13■□□□□ 0.01
Shox2P70390 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shox2P70390 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shox2P70390 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shox2P70390 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shox2P70390 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Shox2P70390 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shox2P70390 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shox2P70390 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Shox2P70390 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Shox2P70390 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shox2P70390 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
Shox2P70390 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Shox2P70390 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC15.13■□□□□ 0.01
Shox2P70390 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shox2P70390 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Shox2P70390 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Shox2P70390 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Shox2P70390 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Shox2P70390 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Shox2P70390 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Shox2P70390 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Shox2P70390 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
Shox2P70390 Mir1199-201ENSMUST00000117015 119 ntBASIC15.12■□□□□ 0.01
Shox2P70390 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Shox2P70390 Gm10052-201ENSMUST00000168019 960 ntBASIC15.12■□□□□ 0.01
Shox2P70390 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Shox2P70390 AC160980.1-201ENSMUST00000224136 970 ntBASIC15.12■□□□□ 0.01
Shox2P70390 Gm7729-201ENSMUST00000050143 801 ntBASIC15.12■□□□□ 0.01
Shox2P70390 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Shox2P70390 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Shox2P70390 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Shox2P70390 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Shox2P70390 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Shox2P70390 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Shox2P70390 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC15.12■□□□□ 0.01
Shox2P70390 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Shox2P70390 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Shox2P70390 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Shox2P70390 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Shox2P70390 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Shox2P70390 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Shox2P70390 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Shox2P70390 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
Shox2P70390 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Shox2P70390 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC15.11■□□□□ 0.01
Shox2P70390 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Shox2P70390 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Shox2P70390 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
Shox2P70390 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Shox2P70390 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Shox2P70390 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Shox2P70390 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Shox2P70390 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Shox2P70390 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC15.11■□□□□ 0.01
Shox2P70390 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Shox2P70390 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Shox2P70390 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Shox2P70390 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Shox2P70390 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Shox2P70390 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Shox2P70390 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shox2P70390 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shox2P70390 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shox2P70390 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Shox2P70390 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shox2P70390 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shox2P70390 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shox2P70390 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shox2P70390 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC15.1■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 47.3 ms