Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col18a1P39061 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col18a1P39061 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col18a1P39061 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Col18a1P39061 Gm37230-201ENSMUST00000194491 818 ntBASIC20.03■□□□□ 0.8
Col18a1P39061 Gm44799-201ENSMUST00000207639 1202 ntBASIC20.03■□□□□ 0.8
Col18a1P39061 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col18a1P39061 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col18a1P39061 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Col18a1P39061 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col18a1P39061 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col18a1P39061 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC20.02■□□□□ 0.8
Col18a1P39061 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col18a1P39061 Gm43294-201ENSMUST00000202850 2490 ntBASIC20.02■□□□□ 0.8
Col18a1P39061 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Col18a1P39061 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col18a1P39061 Gm45784-201ENSMUST00000188360 142 ntBASIC20.02■□□□□ 0.8
Col18a1P39061 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Col18a1P39061 AC110817.1-201ENSMUST00000225706 605 ntBASIC20.02■□□□□ 0.8
Col18a1P39061 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
Col18a1P39061 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col18a1P39061 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Col18a1P39061 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
Col18a1P39061 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Col18a1P39061 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Col18a1P39061 Gm45751-201ENSMUST00000210185 1573 ntBASIC20.01■□□□□ 0.79
Col18a1P39061 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col18a1P39061 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC20.01■□□□□ 0.79
Col18a1P39061 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col18a1P39061 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC20.01■□□□□ 0.79
Col18a1P39061 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col18a1P39061 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC20.01■□□□□ 0.79
Col18a1P39061 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Col18a1P39061 Gm43179-201ENSMUST00000198797 275 ntBASIC20.01■□□□□ 0.79
Col18a1P39061 Gm6916-202ENSMUST00000205523 195 ntBASIC20.01■□□□□ 0.79
Col18a1P39061 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC20.01■□□□□ 0.79
Col18a1P39061 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col18a1P39061 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
Col18a1P39061 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col18a1P39061 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col18a1P39061 Mir692-1-201ENSMUST00000102263 109 ntBASIC20■□□□□ 0.79
Col18a1P39061 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC20■□□□□ 0.79
Col18a1P39061 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC20■□□□□ 0.79
Col18a1P39061 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC20■□□□□ 0.79
Col18a1P39061 AC154846.1-201ENSMUST00000226278 862 ntBASIC20■□□□□ 0.79
Col18a1P39061 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC20■□□□□ 0.79
Col18a1P39061 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Col18a1P39061 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col18a1P39061 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col18a1P39061 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col18a1P39061 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC20■□□□□ 0.79
Col18a1P39061 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC20■□□□□ 0.79
Col18a1P39061 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC20■□□□□ 0.79
Col18a1P39061 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC20■□□□□ 0.79
Col18a1P39061 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Col18a1P39061 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col18a1P39061 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
Col18a1P39061 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC20■□□□□ 0.79
Col18a1P39061 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC20■□□□□ 0.79
Col18a1P39061 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
Col18a1P39061 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col18a1P39061 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col18a1P39061 Gm11661-201ENSMUST00000121761 1327 ntBASIC20■□□□□ 0.79
Col18a1P39061 Gm42853-201ENSMUST00000201273 1387 ntBASIC20■□□□□ 0.79
Col18a1P39061 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC20■□□□□ 0.79
Col18a1P39061 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col18a1P39061 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC19.99■□□□□ 0.79
Col18a1P39061 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Col18a1P39061 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col18a1P39061 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col18a1P39061 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC19.99■□□□□ 0.79
Col18a1P39061 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC19.99■□□□□ 0.79
Col18a1P39061 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col18a1P39061 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Col18a1P39061 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col18a1P39061 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Col18a1P39061 Gm33320-201ENSMUST00000192232 530 ntBASIC19.99■□□□□ 0.79
Col18a1P39061 AC154171.1-201ENSMUST00000224610 643 ntBASIC19.99■□□□□ 0.79
Col18a1P39061 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC19.99■□□□□ 0.79
Col18a1P39061 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col18a1P39061 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col18a1P39061 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col18a1P39061 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Col18a1P39061 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col18a1P39061 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Col18a1P39061 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Col18a1P39061 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
Col18a1P39061 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col18a1P39061 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Col18a1P39061 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
Col18a1P39061 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC19.98■□□□□ 0.79
Col18a1P39061 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
Col18a1P39061 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col18a1P39061 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col18a1P39061 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col18a1P39061 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Col18a1P39061 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col18a1P39061 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col18a1P39061 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col18a1P39061 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 38.9 ms