Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lmx1bO88609 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lmx1bO88609 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lmx1bO88609 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Lmx1bO88609 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC13.85□□□□□ -0.19
Lmx1bO88609 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lmx1bO88609 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Lmx1bO88609 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Lmx1bO88609 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Lmx1bO88609 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC13.85□□□□□ -0.19
Lmx1bO88609 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC13.85□□□□□ -0.19
Lmx1bO88609 Gm24513-201ENSMUST00000174964 138 ntBASIC13.85□□□□□ -0.19
Lmx1bO88609 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Lmx1bO88609 Gm7787-201ENSMUST00000216858 688 ntBASIC13.85□□□□□ -0.19
Lmx1bO88609 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Lmx1bO88609 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lmx1bO88609 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Lmx1bO88609 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lmx1bO88609 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Lmx1bO88609 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lmx1bO88609 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Lmx1bO88609 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lmx1bO88609 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lmx1bO88609 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lmx1bO88609 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Lmx1bO88609 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lmx1bO88609 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lmx1bO88609 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
Lmx1bO88609 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lmx1bO88609 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lmx1bO88609 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Lmx1bO88609 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lmx1bO88609 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lmx1bO88609 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Lmx1bO88609 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Lmx1bO88609 Best4-ps-201ENSMUST00000129783 1380 ntBASIC13.84□□□□□ -0.19
Lmx1bO88609 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Lmx1bO88609 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Lmx1bO88609 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Lmx1bO88609 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Lmx1bO88609 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC13.84□□□□□ -0.19
Lmx1bO88609 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Lmx1bO88609 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Lmx1bO88609 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Lmx1bO88609 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Lmx1bO88609 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC13.84□□□□□ -0.19
Lmx1bO88609 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC13.84□□□□□ -0.19
Lmx1bO88609 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Lmx1bO88609 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Lmx1bO88609 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Lmx1bO88609 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Lmx1bO88609 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC13.84□□□□□ -0.19
Lmx1bO88609 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Lmx1bO88609 AC127302.2-201ENSMUST00000215212 268 ntBASIC13.84□□□□□ -0.19
Lmx1bO88609 AC158538.2-201ENSMUST00000225455 906 ntBASIC13.84□□□□□ -0.19
Lmx1bO88609 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
Lmx1bO88609 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC13.84□□□□□ -0.19
Lmx1bO88609 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Lmx1bO88609 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Lmx1bO88609 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Lmx1bO88609 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC13.84□□□□□ -0.19
Lmx1bO88609 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Lmx1bO88609 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC13.84□□□□□ -0.19
Lmx1bO88609 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Lmx1bO88609 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
Lmx1bO88609 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Lmx1bO88609 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Lmx1bO88609 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC13.84□□□□□ -0.19
Lmx1bO88609 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
Lmx1bO88609 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Lmx1bO88609 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Lmx1bO88609 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Lmx1bO88609 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Lmx1bO88609 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Lmx1bO88609 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Lmx1bO88609 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC13.83□□□□□ -0.19
Lmx1bO88609 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Lmx1bO88609 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Lmx1bO88609 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.19
Lmx1bO88609 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Lmx1bO88609 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Lmx1bO88609 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Lmx1bO88609 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Lmx1bO88609 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
Lmx1bO88609 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Lmx1bO88609 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Lmx1bO88609 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Lmx1bO88609 Gm23935-201ENSMUST00000102303 57 ntBASIC13.83□□□□□ -0.2
Lmx1bO88609 Gm24270-201ENSMUST00000102326 57 ntBASIC13.83□□□□□ -0.2
Lmx1bO88609 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
Lmx1bO88609 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Lmx1bO88609 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Lmx1bO88609 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC13.83□□□□□ -0.2
Lmx1bO88609 H2af-ps-201ENSMUST00000119066 295 ntBASIC13.83□□□□□ -0.2
Lmx1bO88609 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Lmx1bO88609 Gm24245-201ENSMUST00000157318 57 ntBASIC13.83□□□□□ -0.2
Lmx1bO88609 Gm18489-201ENSMUST00000172565 551 ntBASIC13.83□□□□□ -0.2
Lmx1bO88609 Gm44945-201ENSMUST00000206764 1187 ntBASIC13.83□□□□□ -0.2
Lmx1bO88609 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
Lmx1bO88609 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms