Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC14.57□□□□□ -0.08
Clk3O35492 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Clk3O35492 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clk3O35492 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clk3O35492 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Clk3O35492 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC14.56□□□□□ -0.08
Clk3O35492 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clk3O35492 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clk3O35492 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clk3O35492 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Clk3O35492 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clk3O35492 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clk3O35492 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC14.56□□□□□ -0.08
Clk3O35492 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clk3O35492 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clk3O35492 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clk3O35492 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clk3O35492 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC14.56□□□□□ -0.08
Clk3O35492 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clk3O35492 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC14.56□□□□□ -0.08
Clk3O35492 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC14.56□□□□□ -0.08
Clk3O35492 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clk3O35492 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clk3O35492 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clk3O35492 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC14.56□□□□□ -0.08
Clk3O35492 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Clk3O35492 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC14.56□□□□□ -0.08
Clk3O35492 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clk3O35492 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Clk3O35492 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Clk3O35492 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Clk3O35492 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clk3O35492 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clk3O35492 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clk3O35492 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clk3O35492 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Clk3O35492 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Clk3O35492 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clk3O35492 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC14.55□□□□□ -0.08
Clk3O35492 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC14.55□□□□□ -0.08
Clk3O35492 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Clk3O35492 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clk3O35492 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Clk3O35492 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clk3O35492 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Clk3O35492 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clk3O35492 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clk3O35492 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clk3O35492 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clk3O35492 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC14.55□□□□□ -0.08
Clk3O35492 Gm9172-201ENSMUST00000212092 954 ntBASIC14.55□□□□□ -0.08
Clk3O35492 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC14.55□□□□□ -0.08
Clk3O35492 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
Clk3O35492 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clk3O35492 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clk3O35492 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clk3O35492 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clk3O35492 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clk3O35492 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Clk3O35492 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clk3O35492 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clk3O35492 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC14.55□□□□□ -0.08
Clk3O35492 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clk3O35492 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC14.55□□□□□ -0.08
Clk3O35492 Gm11960-202ENSMUST00000181063 2858 ntBASIC14.55□□□□□ -0.08
Clk3O35492 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clk3O35492 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clk3O35492 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Clk3O35492 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC14.54□□□□□ -0.08
Clk3O35492 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clk3O35492 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC14.54□□□□□ -0.08
Clk3O35492 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clk3O35492 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Clk3O35492 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clk3O35492 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Clk3O35492 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clk3O35492 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Clk3O35492 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Clk3O35492 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clk3O35492 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clk3O35492 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clk3O35492 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Clk3O35492 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC14.54□□□□□ -0.08
Clk3O35492 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clk3O35492 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clk3O35492 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clk3O35492 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Clk3O35492 Gm7935-201ENSMUST00000100555 1278 ntBASIC14.54□□□□□ -0.08
Clk3O35492 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC14.54□□□□□ -0.08
Clk3O35492 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Clk3O35492 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clk3O35492 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clk3O35492 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clk3O35492 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Clk3O35492 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clk3O35492 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clk3O35492 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Clk3O35492 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clk3O35492 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clk3O35492 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC14.54□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms