Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Scn11aQ9R053 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Scn11aQ9R053 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Scn11aQ9R053 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Scn11aQ9R053 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Scn11aQ9R053 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
Scn11aQ9R053 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Scn11aQ9R053 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC17.96■□□□□ 0.47
Scn11aQ9R053 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Scn11aQ9R053 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC17.96■□□□□ 0.47
Scn11aQ9R053 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Scn11aQ9R053 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Scn11aQ9R053 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Scn11aQ9R053 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Scn11aQ9R053 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Scn11aQ9R053 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.46
Scn11aQ9R053 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC17.96■□□□□ 0.46
Scn11aQ9R053 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC17.96■□□□□ 0.46
Scn11aQ9R053 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Scn11aQ9R053 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Scn11aQ9R053 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Scn11aQ9R053 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Scn11aQ9R053 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
Scn11aQ9R053 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Scn11aQ9R053 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Scn11aQ9R053 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC17.95■□□□□ 0.46
Scn11aQ9R053 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Scn11aQ9R053 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Scn11aQ9R053 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Scn11aQ9R053 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Scn11aQ9R053 Gm8116-201ENSMUST00000182917 1201 ntBASIC17.95■□□□□ 0.46
Scn11aQ9R053 Gm29310-201ENSMUST00000185468 696 ntBASIC17.95■□□□□ 0.46
Scn11aQ9R053 Gm21825-201ENSMUST00000185728 696 ntBASIC17.95■□□□□ 0.46
Scn11aQ9R053 Gm29109-201ENSMUST00000185895 696 ntBASIC17.95■□□□□ 0.46
Scn11aQ9R053 Gm21896-201ENSMUST00000186520 696 ntBASIC17.95■□□□□ 0.46
Scn11aQ9R053 Gm21873-201ENSMUST00000186728 696 ntBASIC17.95■□□□□ 0.46
Scn11aQ9R053 Gm21794-201ENSMUST00000187056 696 ntBASIC17.95■□□□□ 0.46
Scn11aQ9R053 Gm21880-201ENSMUST00000187275 696 ntBASIC17.95■□□□□ 0.46
Scn11aQ9R053 Gm21826-201ENSMUST00000187451 696 ntBASIC17.95■□□□□ 0.46
Scn11aQ9R053 Gm21198-201ENSMUST00000188393 696 ntBASIC17.95■□□□□ 0.46
Scn11aQ9R053 Gm21749-201ENSMUST00000189343 696 ntBASIC17.95■□□□□ 0.46
Scn11aQ9R053 Gm21901-201ENSMUST00000189568 696 ntBASIC17.95■□□□□ 0.46
Scn11aQ9R053 Gm29424-201ENSMUST00000189716 696 ntBASIC17.95■□□□□ 0.46
Scn11aQ9R053 Gm28599-201ENSMUST00000189838 694 ntBASIC17.95■□□□□ 0.46
Scn11aQ9R053 Gm21867-201ENSMUST00000189917 696 ntBASIC17.95■□□□□ 0.46
Scn11aQ9R053 Gm29269-201ENSMUST00000190087 696 ntBASIC17.95■□□□□ 0.46
Scn11aQ9R053 Gm21722-201ENSMUST00000190153 696 ntBASIC17.95■□□□□ 0.46
Scn11aQ9R053 Gm28423-201ENSMUST00000190701 696 ntBASIC17.95■□□□□ 0.46
Scn11aQ9R053 Gm21899-201ENSMUST00000190745 696 ntBASIC17.95■□□□□ 0.46
Scn11aQ9R053 Gm21910-201ENSMUST00000191163 696 ntBASIC17.95■□□□□ 0.46
Scn11aQ9R053 Gm21849-201ENSMUST00000191571 696 ntBASIC17.95■□□□□ 0.46
Scn11aQ9R053 Gm28678-201ENSMUST00000191593 696 ntBASIC17.95■□□□□ 0.46
Scn11aQ9R053 Gm20910-201ENSMUST00000193268 696 ntBASIC17.95■□□□□ 0.46
Scn11aQ9R053 Gm21871-201ENSMUST00000194621 696 ntBASIC17.95■□□□□ 0.46
Scn11aQ9R053 AC133083.1-201ENSMUST00000221736 2209 ntBASIC17.95■□□□□ 0.46
Scn11aQ9R053 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Scn11aQ9R053 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Scn11aQ9R053 Gm25857-201ENSMUST00000082788 129 ntBASIC17.95■□□□□ 0.46
Scn11aQ9R053 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Scn11aQ9R053 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC17.94■□□□□ 0.46
Scn11aQ9R053 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Scn11aQ9R053 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC17.94■□□□□ 0.46
Scn11aQ9R053 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Scn11aQ9R053 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC17.94■□□□□ 0.46
Scn11aQ9R053 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC17.94■□□□□ 0.46
Scn11aQ9R053 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC17.94■□□□□ 0.46
Scn11aQ9R053 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC17.94■□□□□ 0.46
Scn11aQ9R053 Gm9824-201ENSMUST00000178707 561 ntBASIC17.94■□□□□ 0.46
Scn11aQ9R053 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Scn11aQ9R053 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Scn11aQ9R053 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Scn11aQ9R053 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Scn11aQ9R053 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
Scn11aQ9R053 Gm11839-201ENSMUST00000120647 1953 ntBASIC17.94■□□□□ 0.46
Scn11aQ9R053 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Scn11aQ9R053 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Scn11aQ9R053 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
Scn11aQ9R053 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC17.94■□□□□ 0.46
Scn11aQ9R053 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Scn11aQ9R053 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Scn11aQ9R053 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Scn11aQ9R053 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Scn11aQ9R053 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Scn11aQ9R053 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC17.94■□□□□ 0.46
Scn11aQ9R053 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Scn11aQ9R053 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Scn11aQ9R053 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Scn11aQ9R053 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Scn11aQ9R053 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC17.93■□□□□ 0.46
Scn11aQ9R053 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Scn11aQ9R053 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Scn11aQ9R053 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Scn11aQ9R053 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Scn11aQ9R053 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Scn11aQ9R053 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC17.93■□□□□ 0.46
Scn11aQ9R053 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Scn11aQ9R053 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Scn11aQ9R053 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Scn11aQ9R053 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Scn11aQ9R053 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms