Protein–RNA interactions for Protein: Q8VEE4

Rpa1, Replication protein A 70 kDa DNA-binding subunit, mousemouse

Known RBP Predictions only

Length 623 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpa1Q8VEE4 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC15.47■□□□□ 0.07
Rpa1Q8VEE4 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Rpa1Q8VEE4 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC15.47■□□□□ 0.07
Rpa1Q8VEE4 Gm20472-201ENSMUST00000174403 1240 ntBASIC15.47■□□□□ 0.07
Rpa1Q8VEE4 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC15.47■□□□□ 0.07
Rpa1Q8VEE4 Mir1668-201ENSMUST00000184114 107 ntBASIC15.47■□□□□ 0.07
Rpa1Q8VEE4 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
Rpa1Q8VEE4 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Rpa1Q8VEE4 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
Rpa1Q8VEE4 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Rpa1Q8VEE4 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Rpa1Q8VEE4 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Rpa1Q8VEE4 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Rpa1Q8VEE4 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Rpa1Q8VEE4 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC15.47■□□□□ 0.07
Rpa1Q8VEE4 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Rpa1Q8VEE4 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Rpa1Q8VEE4 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC15.46■□□□□ 0.07
Rpa1Q8VEE4 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Rpa1Q8VEE4 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC15.46■□□□□ 0.07
Rpa1Q8VEE4 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Rpa1Q8VEE4 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.07
Rpa1Q8VEE4 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Rpa1Q8VEE4 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Rpa1Q8VEE4 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Rpa1Q8VEE4 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Rpa1Q8VEE4 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Rpa1Q8VEE4 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Rpa1Q8VEE4 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Rpa1Q8VEE4 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC15.46■□□□□ 0.07
Rpa1Q8VEE4 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
Rpa1Q8VEE4 CT009713.7-201ENSMUST00000224689 571 ntBASIC15.46■□□□□ 0.07
Rpa1Q8VEE4 Gm7367-201ENSMUST00000057611 492 ntBASIC15.46■□□□□ 0.07
Rpa1Q8VEE4 Camk2g-217ENSMUST00000226630 1937 ntBASIC15.46■□□□□ 0.07
Rpa1Q8VEE4 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC15.46■□□□□ 0.07
Rpa1Q8VEE4 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Rpa1Q8VEE4 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.07
Rpa1Q8VEE4 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Rpa1Q8VEE4 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Rpa1Q8VEE4 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Rpa1Q8VEE4 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.06
Rpa1Q8VEE4 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Rpa1Q8VEE4 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Rpa1Q8VEE4 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Rpa1Q8VEE4 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
Rpa1Q8VEE4 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Rpa1Q8VEE4 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
Rpa1Q8VEE4 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Rpa1Q8VEE4 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Rpa1Q8VEE4 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Rpa1Q8VEE4 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
Rpa1Q8VEE4 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
Rpa1Q8VEE4 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Rpa1Q8VEE4 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Rpa1Q8VEE4 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Rpa1Q8VEE4 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Rpa1Q8VEE4 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Rpa1Q8VEE4 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Rpa1Q8VEE4 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC15.45■□□□□ 0.06
Rpa1Q8VEE4 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Rpa1Q8VEE4 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Rpa1Q8VEE4 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Rpa1Q8VEE4 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Rpa1Q8VEE4 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Gm29179-208ENSMUST00000190450 1137 ntTSL 5 BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Gm12620-201ENSMUST00000119791 1986 ntBASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Gm12612-201ENSMUST00000140182 1986 ntBASIC15.44■□□□□ 0.06
Rpa1Q8VEE4 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 41.6 ms