Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Lsm1Q8VC85 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
Lsm1Q8VC85 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Lsm1Q8VC85 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
Lsm1Q8VC85 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Lsm1Q8VC85 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Lsm1Q8VC85 Gm11960-202ENSMUST00000181063 2858 ntBASIC14.7□□□□□ -0.06
Lsm1Q8VC85 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Lsm1Q8VC85 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Lsm1Q8VC85 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Lsm1Q8VC85 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC14.7□□□□□ -0.06
Lsm1Q8VC85 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Lsm1Q8VC85 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Lsm1Q8VC85 Gm30437-201ENSMUST00000206086 1201 ntBASIC14.7□□□□□ -0.06
Lsm1Q8VC85 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Lsm1Q8VC85 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
Lsm1Q8VC85 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Lsm1Q8VC85 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Lsm1Q8VC85 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Lsm1Q8VC85 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Lsm1Q8VC85 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Lsm1Q8VC85 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Lsm1Q8VC85 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Lsm1Q8VC85 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Lsm1Q8VC85 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Lsm1Q8VC85 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Lsm1Q8VC85 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Lsm1Q8VC85 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Lsm1Q8VC85 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Lsm1Q8VC85 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Lsm1Q8VC85 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC14.7□□□□□ -0.06
Lsm1Q8VC85 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Lsm1Q8VC85 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Lsm1Q8VC85 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
Lsm1Q8VC85 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Lsm1Q8VC85 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
Lsm1Q8VC85 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Lsm1Q8VC85 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Lsm1Q8VC85 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Lsm1Q8VC85 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Lsm1Q8VC85 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Lsm1Q8VC85 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Lsm1Q8VC85 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Lsm1Q8VC85 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
Lsm1Q8VC85 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Lsm1Q8VC85 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC14.69□□□□□ -0.06
Lsm1Q8VC85 Gm8655-201ENSMUST00000221159 852 ntBASIC14.69□□□□□ -0.06
Lsm1Q8VC85 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Lsm1Q8VC85 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Lsm1Q8VC85 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Lsm1Q8VC85 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Lsm1Q8VC85 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Lsm1Q8VC85 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Lsm1Q8VC85 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Lsm1Q8VC85 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Lsm1Q8VC85 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Lsm1Q8VC85 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Lsm1Q8VC85 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Lsm1Q8VC85 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
Lsm1Q8VC85 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Lsm1Q8VC85 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC14.68□□□□□ -0.06
Lsm1Q8VC85 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC14.68□□□□□ -0.06
Lsm1Q8VC85 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC14.68□□□□□ -0.06
Lsm1Q8VC85 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC14.68□□□□□ -0.06
Lsm1Q8VC85 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Lsm1Q8VC85 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Lsm1Q8VC85 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC14.68□□□□□ -0.06
Lsm1Q8VC85 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC14.68□□□□□ -0.06
Lsm1Q8VC85 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Lsm1Q8VC85 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Lsm1Q8VC85 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC14.68□□□□□ -0.06
Lsm1Q8VC85 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Lsm1Q8VC85 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Lsm1Q8VC85 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Lsm1Q8VC85 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Lsm1Q8VC85 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Lsm1Q8VC85 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Lsm1Q8VC85 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Lsm1Q8VC85 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Lsm1Q8VC85 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC14.67□□□□□ -0.06
Lsm1Q8VC85 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lsm1Q8VC85 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lsm1Q8VC85 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Lsm1Q8VC85 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lsm1Q8VC85 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lsm1Q8VC85 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lsm1Q8VC85 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Lsm1Q8VC85 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lsm1Q8VC85 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lsm1Q8VC85 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC14.67□□□□□ -0.06
Lsm1Q8VC85 Gm12895-201ENSMUST00000122214 226 ntBASIC14.67□□□□□ -0.06
Lsm1Q8VC85 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lsm1Q8VC85 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC14.67□□□□□ -0.06
Lsm1Q8VC85 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC14.67□□□□□ -0.06
Lsm1Q8VC85 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC14.67□□□□□ -0.06
Lsm1Q8VC85 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC14.67□□□□□ -0.06
Lsm1Q8VC85 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC14.67□□□□□ -0.06
Lsm1Q8VC85 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lsm1Q8VC85 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
Lsm1Q8VC85 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms