Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Brf1Q8CFK2 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
Brf1Q8CFK2 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Brf1Q8CFK2 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
Brf1Q8CFK2 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Brf1Q8CFK2 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Brf1Q8CFK2 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Brf1Q8CFK2 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Brf1Q8CFK2 Gm7901-201ENSMUST00000120430 1597 ntBASIC18.48■□□□□ 0.55
Brf1Q8CFK2 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Brf1Q8CFK2 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Brf1Q8CFK2 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC18.48■□□□□ 0.55
Brf1Q8CFK2 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC18.48■□□□□ 0.55
Brf1Q8CFK2 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC18.48■□□□□ 0.55
Brf1Q8CFK2 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Brf1Q8CFK2 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Brf1Q8CFK2 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Brf1Q8CFK2 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
Brf1Q8CFK2 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Brf1Q8CFK2 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Brf1Q8CFK2 Gm5184-201ENSMUST00000220417 1702 ntBASIC18.48■□□□□ 0.55
Brf1Q8CFK2 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Brf1Q8CFK2 Sybu-209ENSMUST00000228639 4113 ntBASIC18.48■□□□□ 0.55
Brf1Q8CFK2 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Brf1Q8CFK2 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Brf1Q8CFK2 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
Brf1Q8CFK2 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Brf1Q8CFK2 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Brf1Q8CFK2 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Brf1Q8CFK2 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Brf1Q8CFK2 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Brf1Q8CFK2 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Brf1Q8CFK2 Gm4899-201ENSMUST00000178708 719 ntBASIC18.47■□□□□ 0.55
Brf1Q8CFK2 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Brf1Q8CFK2 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Brf1Q8CFK2 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Brf1Q8CFK2 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Brf1Q8CFK2 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Brf1Q8CFK2 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
Brf1Q8CFK2 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Brf1Q8CFK2 Gm45293-201ENSMUST00000209754 1812 ntBASIC18.46■□□□□ 0.55
Brf1Q8CFK2 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Brf1Q8CFK2 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Brf1Q8CFK2 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Brf1Q8CFK2 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
Brf1Q8CFK2 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC18.46■□□□□ 0.55
Brf1Q8CFK2 Gm27628-201ENSMUST00000184911 107 ntBASIC18.46■□□□□ 0.55
Brf1Q8CFK2 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC18.46■□□□□ 0.55
Brf1Q8CFK2 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Brf1Q8CFK2 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Brf1Q8CFK2 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Brf1Q8CFK2 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Brf1Q8CFK2 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Brf1Q8CFK2 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC18.46■□□□□ 0.55
Brf1Q8CFK2 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
Brf1Q8CFK2 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC18.46■□□□□ 0.55
Brf1Q8CFK2 Gm38318-201ENSMUST00000195769 1706 ntBASIC18.46■□□□□ 0.55
Brf1Q8CFK2 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
Brf1Q8CFK2 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Brf1Q8CFK2 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Brf1Q8CFK2 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Brf1Q8CFK2 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Brf1Q8CFK2 AC154527.4-201ENSMUST00000224364 1667 ntBASIC18.45■□□□□ 0.54
Brf1Q8CFK2 Gm43352-201ENSMUST00000196419 3065 ntBASIC18.45■□□□□ 0.54
Brf1Q8CFK2 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Brf1Q8CFK2 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Brf1Q8CFK2 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC18.45■□□□□ 0.54
Brf1Q8CFK2 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Brf1Q8CFK2 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Brf1Q8CFK2 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Brf1Q8CFK2 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Brf1Q8CFK2 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Brf1Q8CFK2 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Brf1Q8CFK2 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Brf1Q8CFK2 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Brf1Q8CFK2 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Brf1Q8CFK2 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Brf1Q8CFK2 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Brf1Q8CFK2 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Brf1Q8CFK2 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Brf1Q8CFK2 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Brf1Q8CFK2 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Brf1Q8CFK2 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Brf1Q8CFK2 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Brf1Q8CFK2 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Brf1Q8CFK2 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Brf1Q8CFK2 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC18.44■□□□□ 0.54
Brf1Q8CFK2 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Brf1Q8CFK2 Best4-ps-201ENSMUST00000129783 1380 ntBASIC18.44■□□□□ 0.54
Brf1Q8CFK2 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Brf1Q8CFK2 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
Brf1Q8CFK2 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Brf1Q8CFK2 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Brf1Q8CFK2 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Brf1Q8CFK2 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Brf1Q8CFK2 Gm5049-201ENSMUST00000195878 1590 ntBASIC18.44■□□□□ 0.54
Brf1Q8CFK2 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Brf1Q8CFK2 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Brf1Q8CFK2 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC18.44■□□□□ 0.54
Brf1Q8CFK2 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC18.44■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 34.6 ms