Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Asic1-205ENSMUST00000228185 1818 ntBASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC17.81■□□□□ 0.44
Vps53Q8CCB4 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Vps53Q8CCB4 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Vps53Q8CCB4 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Vps53Q8CCB4 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Vps53Q8CCB4 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Vps53Q8CCB4 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Vps53Q8CCB4 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC17.81■□□□□ 0.44
Vps53Q8CCB4 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Vps53Q8CCB4 Gm27397-201ENSMUST00000184997 107 ntBASIC17.81■□□□□ 0.44
Vps53Q8CCB4 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Vps53Q8CCB4 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Vps53Q8CCB4 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Vps53Q8CCB4 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Vps53Q8CCB4 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC17.81■□□□□ 0.44
Vps53Q8CCB4 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Vps53Q8CCB4 Gm37500-201ENSMUST00000192059 1443 ntBASIC17.81■□□□□ 0.44
Vps53Q8CCB4 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Gm23935-201ENSMUST00000102303 57 ntBASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Gm24270-201ENSMUST00000102326 57 ntBASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Gm11780-201ENSMUST00000136880 516 ntBASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Gm24245-201ENSMUST00000157318 57 ntBASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Gm27628-201ENSMUST00000184911 107 ntBASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Sybu-209ENSMUST00000228639 4113 ntBASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Vps53Q8CCB4 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Vps53Q8CCB4 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Vps53Q8CCB4 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Vps53Q8CCB4 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Vps53Q8CCB4 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Vps53Q8CCB4 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC17.79■□□□□ 0.44
Vps53Q8CCB4 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC17.79■□□□□ 0.44
Vps53Q8CCB4 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Vps53Q8CCB4 Gm8349-201ENSMUST00000182720 1003 ntBASIC17.79■□□□□ 0.44
Vps53Q8CCB4 Gm45683-201ENSMUST00000210825 1247 ntBASIC17.79■□□□□ 0.44
Vps53Q8CCB4 Gm9172-201ENSMUST00000212092 954 ntBASIC17.79■□□□□ 0.44
Vps53Q8CCB4 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Vps53Q8CCB4 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
Vps53Q8CCB4 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Vps53Q8CCB4 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Vps53Q8CCB4 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Vps53Q8CCB4 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Vps53Q8CCB4 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Vps53Q8CCB4 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Vps53Q8CCB4 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC17.79■□□□□ 0.44
Vps53Q8CCB4 AC131586.3-201ENSMUST00000228355 1367 ntBASIC17.79■□□□□ 0.44
Vps53Q8CCB4 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Vps53Q8CCB4 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Vps53Q8CCB4 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Vps53Q8CCB4 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Vps53Q8CCB4 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Vps53Q8CCB4 Gm6184-201ENSMUST00000120403 1261 ntBASIC17.78■□□□□ 0.44
Vps53Q8CCB4 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC17.78■□□□□ 0.44
Vps53Q8CCB4 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Vps53Q8CCB4 Gm25406-201ENSMUST00000157599 105 ntBASIC17.78■□□□□ 0.44
Vps53Q8CCB4 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC17.78■□□□□ 0.44
Vps53Q8CCB4 AC225888.1-201ENSMUST00000227184 728 ntBASIC17.78■□□□□ 0.44
Vps53Q8CCB4 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Vps53Q8CCB4 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Vps53Q8CCB4 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
Vps53Q8CCB4 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Vps53Q8CCB4 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Vps53Q8CCB4 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Vps53Q8CCB4 Gm5837-201ENSMUST00000191844 1369 ntBASIC17.78■□□□□ 0.44
Vps53Q8CCB4 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Vps53Q8CCB4 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Vps53Q8CCB4 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Vps53Q8CCB4 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Vps53Q8CCB4 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Vps53Q8CCB4 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Vps53Q8CCB4 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Vps53Q8CCB4 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 44.5 ms