Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Ccdc40Q8BI79 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ccdc40Q8BI79 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ccdc40Q8BI79 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ccdc40Q8BI79 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC16.02■□□□□ 0.16
Ccdc40Q8BI79 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
Ccdc40Q8BI79 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ccdc40Q8BI79 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Ccdc40Q8BI79 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
Ccdc40Q8BI79 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ccdc40Q8BI79 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ccdc40Q8BI79 Gm4609-201ENSMUST00000106443 1002 ntBASIC16.02■□□□□ 0.16
Ccdc40Q8BI79 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
Ccdc40Q8BI79 Gm5138-201ENSMUST00000113842 1002 ntBASIC16.02■□□□□ 0.16
Ccdc40Q8BI79 Gm15191-201ENSMUST00000117933 1000 ntBASIC16.02■□□□□ 0.16
Ccdc40Q8BI79 Gm12182-201ENSMUST00000118655 1008 ntBASIC16.02■□□□□ 0.16
Ccdc40Q8BI79 Gm13882-201ENSMUST00000120886 1002 ntBASIC16.02■□□□□ 0.16
Ccdc40Q8BI79 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ccdc40Q8BI79 Gm10284-201ENSMUST00000145057 1005 ntBASIC16.02■□□□□ 0.16
Ccdc40Q8BI79 Gm10481-201ENSMUST00000179228 1002 ntBASIC16.02■□□□□ 0.16
Ccdc40Q8BI79 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC16.02■□□□□ 0.16
Ccdc40Q8BI79 Gm2574-201ENSMUST00000181051 1002 ntBASIC16.02■□□□□ 0.16
Ccdc40Q8BI79 Gm3200-201ENSMUST00000181493 1002 ntBASIC16.02■□□□□ 0.16
Ccdc40Q8BI79 Gm8825-201ENSMUST00000182565 998 ntBASIC16.02■□□□□ 0.16
Ccdc40Q8BI79 Gm4518-201ENSMUST00000182638 718 ntBASIC16.02■□□□□ 0.16
Ccdc40Q8BI79 Gm8330-201ENSMUST00000182754 1008 ntBASIC16.02■□□□□ 0.16
Ccdc40Q8BI79 Gm4575-201ENSMUST00000182991 1002 ntBASIC16.02■□□□□ 0.16
Ccdc40Q8BI79 Gm8709-201ENSMUST00000183230 1012 ntBASIC16.02■□□□□ 0.16
Ccdc40Q8BI79 Gm10293-201ENSMUST00000076317 1002 ntBASIC16.02■□□□□ 0.16
Ccdc40Q8BI79 Gm6316-201ENSMUST00000082064 1020 ntBASIC16.02■□□□□ 0.16
Ccdc40Q8BI79 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
Ccdc40Q8BI79 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Ccdc40Q8BI79 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Ccdc40Q8BI79 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Ccdc40Q8BI79 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Ccdc40Q8BI79 Gm8784-201ENSMUST00000222096 1435 ntBASIC16.02■□□□□ 0.15
Ccdc40Q8BI79 Stxbp2-207ENSMUST00000160708 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc40Q8BI79 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc40Q8BI79 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc40Q8BI79 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc40Q8BI79 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc40Q8BI79 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc40Q8BI79 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc40Q8BI79 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc40Q8BI79 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
Ccdc40Q8BI79 Gm12895-201ENSMUST00000122214 226 ntBASIC16.01■□□□□ 0.15
Ccdc40Q8BI79 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc40Q8BI79 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc40Q8BI79 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc40Q8BI79 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc40Q8BI79 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc40Q8BI79 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc40Q8BI79 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc40Q8BI79 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc40Q8BI79 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc40Q8BI79 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC16.01■□□□□ 0.15
Ccdc40Q8BI79 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc40Q8BI79 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc40Q8BI79 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC16.01■□□□□ 0.15
Ccdc40Q8BI79 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ccdc40Q8BI79 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Ccdc40Q8BI79 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Ccdc40Q8BI79 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Ccdc40Q8BI79 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
Ccdc40Q8BI79 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Ccdc40Q8BI79 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Ccdc40Q8BI79 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Ccdc40Q8BI79 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Ccdc40Q8BI79 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Ccdc40Q8BI79 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Ccdc40Q8BI79 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC16■□□□□ 0.15
Ccdc40Q8BI79 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Ccdc40Q8BI79 AC163637.1-201ENSMUST00000215491 1894 ntBASIC16■□□□□ 0.15
Ccdc40Q8BI79 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Ccdc40Q8BI79 Gm12497-201ENSMUST00000138778 237 ntBASIC16■□□□□ 0.15
Ccdc40Q8BI79 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC16■□□□□ 0.15
Ccdc40Q8BI79 Gm25745-201ENSMUST00000174945 133 ntBASIC16■□□□□ 0.15
Ccdc40Q8BI79 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC16■□□□□ 0.15
Ccdc40Q8BI79 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Ccdc40Q8BI79 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC16■□□□□ 0.15
Ccdc40Q8BI79 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Ccdc40Q8BI79 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC16■□□□□ 0.15
Ccdc40Q8BI79 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC16■□□□□ 0.15
Ccdc40Q8BI79 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC16■□□□□ 0.15
Ccdc40Q8BI79 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Ccdc40Q8BI79 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC16■□□□□ 0.15
Ccdc40Q8BI79 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Ccdc40Q8BI79 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC16■□□□□ 0.15
Ccdc40Q8BI79 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Ccdc40Q8BI79 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Ccdc40Q8BI79 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Ccdc40Q8BI79 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Ccdc40Q8BI79 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Ccdc40Q8BI79 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Ccdc40Q8BI79 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Ccdc40Q8BI79 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC15.99■□□□□ 0.15
Ccdc40Q8BI79 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Ccdc40Q8BI79 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Ccdc40Q8BI79 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC15.99■□□□□ 0.15
Ccdc40Q8BI79 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 46 ms