Protein–RNA interactions for Protein: Q61371

Ift88, Intraflagellar transport protein 88 homolog, mousemouse

Predictions only

Length 824 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ift88Q61371 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Ift88Q61371 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
Ift88Q61371 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ift88Q61371 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ift88Q61371 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Ift88Q61371 Gm45133-201ENSMUST00000207548 2773 ntBASIC16.97■□□□□ 0.31
Ift88Q61371 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Ift88Q61371 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ift88Q61371 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ift88Q61371 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ift88Q61371 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ift88Q61371 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
Ift88Q61371 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ift88Q61371 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Ift88Q61371 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Ift88Q61371 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Ift88Q61371 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Ift88Q61371 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Ift88Q61371 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
Ift88Q61371 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC16.96■□□□□ 0.31
Ift88Q61371 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Ift88Q61371 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Ift88Q61371 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Ift88Q61371 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Ift88Q61371 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC16.96■□□□□ 0.31
Ift88Q61371 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
Ift88Q61371 Gm30437-201ENSMUST00000206086 1201 ntBASIC16.96■□□□□ 0.31
Ift88Q61371 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC16.96■□□□□ 0.31
Ift88Q61371 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC16.96■□□□□ 0.31
Ift88Q61371 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Ift88Q61371 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Ift88Q61371 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Ift88Q61371 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Ift88Q61371 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
Ift88Q61371 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
Ift88Q61371 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC16.96■□□□□ 0.3
Ift88Q61371 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
Ift88Q61371 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ift88Q61371 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Ift88Q61371 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ift88Q61371 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ift88Q61371 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Ift88Q61371 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ift88Q61371 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ift88Q61371 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Ift88Q61371 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Ift88Q61371 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
Ift88Q61371 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Ift88Q61371 Gm6659-201ENSMUST00000174752 547 ntBASIC16.95■□□□□ 0.3
Ift88Q61371 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC16.95■□□□□ 0.3
Ift88Q61371 Gm27742-201ENSMUST00000184667 60 ntBASIC16.95■□□□□ 0.3
Ift88Q61371 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC16.95■□□□□ 0.3
Ift88Q61371 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ift88Q61371 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Ift88Q61371 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ift88Q61371 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ift88Q61371 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ift88Q61371 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Ift88Q61371 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ift88Q61371 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ift88Q61371 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Ift88Q61371 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC16.95■□□□□ 0.3
Ift88Q61371 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ift88Q61371 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Ift88Q61371 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Ift88Q61371 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Ift88Q61371 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC16.94■□□□□ 0.3
Ift88Q61371 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ift88Q61371 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ift88Q61371 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ift88Q61371 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ift88Q61371 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Ift88Q61371 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Ift88Q61371 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ift88Q61371 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ift88Q61371 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC16.94■□□□□ 0.3
Ift88Q61371 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Ift88Q61371 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ift88Q61371 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC16.94■□□□□ 0.3
Ift88Q61371 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ift88Q61371 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC16.94■□□□□ 0.3
Ift88Q61371 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ift88Q61371 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Ift88Q61371 Gm25745-201ENSMUST00000174945 133 ntBASIC16.94■□□□□ 0.3
Ift88Q61371 Gm7286-201ENSMUST00000182691 1007 ntBASIC16.94■□□□□ 0.3
Ift88Q61371 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ift88Q61371 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ift88Q61371 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ift88Q61371 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ift88Q61371 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC16.94■□□□□ 0.3
Ift88Q61371 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC16.94■□□□□ 0.3
Ift88Q61371 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ift88Q61371 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Ift88Q61371 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ift88Q61371 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Ift88Q61371 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Ift88Q61371 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ift88Q61371 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ift88Q61371 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
Ift88Q61371 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms