Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Nr1h4Q60641 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Nr1h4Q60641 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Nr1h4Q60641 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC14.6□□□□□ -0.07
Nr1h4Q60641 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC14.6□□□□□ -0.07
Nr1h4Q60641 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Nr1h4Q60641 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Nr1h4Q60641 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Nr1h4Q60641 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Nr1h4Q60641 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Nr1h4Q60641 Gm13337-201ENSMUST00000119183 1594 ntBASIC14.6□□□□□ -0.07
Nr1h4Q60641 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Nr1h4Q60641 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Nr1h4Q60641 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Nr1h4Q60641 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Nr1h4Q60641 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC14.59□□□□□ -0.07
Nr1h4Q60641 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC14.59□□□□□ -0.07
Nr1h4Q60641 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Nr1h4Q60641 Gm14722-201ENSMUST00000118943 689 ntBASIC14.59□□□□□ -0.07
Nr1h4Q60641 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC14.59□□□□□ -0.07
Nr1h4Q60641 Gm45328-201ENSMUST00000210942 917 ntBASIC14.59□□□□□ -0.07
Nr1h4Q60641 AC112142.1-201ENSMUST00000228796 918 ntBASIC14.59□□□□□ -0.07
Nr1h4Q60641 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Nr1h4Q60641 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Nr1h4Q60641 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Nr1h4Q60641 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Nr1h4Q60641 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Nr1h4Q60641 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Nr1h4Q60641 Gm5049-201ENSMUST00000195878 1590 ntBASIC14.59□□□□□ -0.07
Nr1h4Q60641 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Nr1h4Q60641 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Nr1h4Q60641 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Nr1h4Q60641 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
Nr1h4Q60641 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Nr1h4Q60641 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Nr1h4Q60641 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Nr1h4Q60641 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Nr1h4Q60641 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Nr1h4Q60641 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.07
Nr1h4Q60641 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Nr1h4Q60641 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Nr1h4Q60641 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Nr1h4Q60641 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Nr1h4Q60641 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Nr1h4Q60641 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Nr1h4Q60641 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Nr1h4Q60641 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Nr1h4Q60641 Gm13312-201ENSMUST00000119631 718 ntBASIC14.58□□□□□ -0.08
Nr1h4Q60641 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Nr1h4Q60641 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC14.58□□□□□ -0.08
Nr1h4Q60641 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC14.58□□□□□ -0.08
Nr1h4Q60641 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Nr1h4Q60641 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC14.58□□□□□ -0.08
Nr1h4Q60641 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Nr1h4Q60641 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Nr1h4Q60641 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Nr1h4Q60641 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Nr1h4Q60641 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Nr1h4Q60641 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Nr1h4Q60641 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Nr1h4Q60641 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Nr1h4Q60641 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Nr1h4Q60641 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC14.58□□□□□ -0.08
Nr1h4Q60641 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Nr1h4Q60641 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Nr1h4Q60641 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC14.58□□□□□ -0.08
Nr1h4Q60641 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Nr1h4Q60641 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Nr1h4Q60641 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC14.57□□□□□ -0.08
Nr1h4Q60641 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Nr1h4Q60641 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Nr1h4Q60641 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Nr1h4Q60641 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Nr1h4Q60641 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Nr1h4Q60641 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Nr1h4Q60641 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Nr1h4Q60641 Gm8349-201ENSMUST00000182720 1003 ntBASIC14.57□□□□□ -0.08
Nr1h4Q60641 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Nr1h4Q60641 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Nr1h4Q60641 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Nr1h4Q60641 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC14.57□□□□□ -0.08
Nr1h4Q60641 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Nr1h4Q60641 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Nr1h4Q60641 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Nr1h4Q60641 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Nr1h4Q60641 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Nr1h4Q60641 Gm5357-201ENSMUST00000212720 1924 ntBASIC14.56□□□□□ -0.08
Nr1h4Q60641 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Nr1h4Q60641 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Nr1h4Q60641 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Nr1h4Q60641 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Nr1h4Q60641 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
Nr1h4Q60641 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Nr1h4Q60641 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Nr1h4Q60641 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Nr1h4Q60641 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Nr1h4Q60641 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Nr1h4Q60641 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Nr1h4Q60641 Ighv6-1-201ENSMUST00000193612 343 ntBASIC14.56□□□□□ -0.08
Nr1h4Q60641 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms