Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC14.4□□□□□ -0.1
Trim40Q3UWA4 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim40Q3UWA4 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trim40Q3UWA4 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC14.4□□□□□ -0.1
Trim40Q3UWA4 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim40Q3UWA4 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Trim40Q3UWA4 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim40Q3UWA4 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim40Q3UWA4 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Trim40Q3UWA4 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim40Q3UWA4 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim40Q3UWA4 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Trim40Q3UWA4 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim40Q3UWA4 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim40Q3UWA4 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim40Q3UWA4 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim40Q3UWA4 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC14.4□□□□□ -0.1
Trim40Q3UWA4 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim40Q3UWA4 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trim40Q3UWA4 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim40Q3UWA4 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trim40Q3UWA4 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Gm5049-201ENSMUST00000195878 1590 ntBASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Gm9484-201ENSMUST00000195892 1159 ntBASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Gm7367-201ENSMUST00000057611 492 ntBASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim40Q3UWA4 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim40Q3UWA4 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim40Q3UWA4 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trim40Q3UWA4 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim40Q3UWA4 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim40Q3UWA4 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trim40Q3UWA4 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim40Q3UWA4 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim40Q3UWA4 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim40Q3UWA4 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trim40Q3UWA4 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC14.38□□□□□ -0.11
Trim40Q3UWA4 Gm13559-201ENSMUST00000120476 863 ntBASIC14.38□□□□□ -0.11
Trim40Q3UWA4 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trim40Q3UWA4 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC14.38□□□□□ -0.11
Trim40Q3UWA4 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC14.38□□□□□ -0.11
Trim40Q3UWA4 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim40Q3UWA4 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
Trim40Q3UWA4 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim40Q3UWA4 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Trim40Q3UWA4 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim40Q3UWA4 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trim40Q3UWA4 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Trim40Q3UWA4 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trim40Q3UWA4 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim40Q3UWA4 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
Trim40Q3UWA4 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Trim40Q3UWA4 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC14.37□□□□□ -0.11
Trim40Q3UWA4 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Trim40Q3UWA4 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Trim40Q3UWA4 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim40Q3UWA4 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Trim40Q3UWA4 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim40Q3UWA4 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim40Q3UWA4 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim40Q3UWA4 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim40Q3UWA4 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim40Q3UWA4 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Trim40Q3UWA4 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC14.37□□□□□ -0.11
Trim40Q3UWA4 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC14.37□□□□□ -0.11
Trim40Q3UWA4 Gm18959-201ENSMUST00000208954 655 ntBASIC14.37□□□□□ -0.11
Trim40Q3UWA4 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Trim40Q3UWA4 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim40Q3UWA4 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim40Q3UWA4 Gm43509-201ENSMUST00000196551 2594 ntBASIC14.37□□□□□ -0.11
Trim40Q3UWA4 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim40Q3UWA4 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 59.2 ms