Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm15590-201ENSMUST00000078419 552 ntBASIC16.39■□□□□ 0.21
Upf3bQ3ULL6 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Upf3bQ3ULL6 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Upf3bQ3ULL6 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Upf3bQ3ULL6 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Upf3bQ3ULL6 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC16.39■□□□□ 0.21
Upf3bQ3ULL6 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Upf3bQ3ULL6 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Upf3bQ3ULL6 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Upf3bQ3ULL6 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Upf3bQ3ULL6 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Upf3bQ3ULL6 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Upf3bQ3ULL6 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Upf3bQ3ULL6 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Upf3bQ3ULL6 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Upf3bQ3ULL6 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Upf3bQ3ULL6 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Upf3bQ3ULL6 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Upf3bQ3ULL6 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Upf3bQ3ULL6 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Upf3bQ3ULL6 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC16.38■□□□□ 0.21
Upf3bQ3ULL6 AC157650.3-201ENSMUST00000225058 1476 ntBASIC16.38■□□□□ 0.21
Upf3bQ3ULL6 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Upf3bQ3ULL6 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC16.38■□□□□ 0.21
Upf3bQ3ULL6 Gm13036-201ENSMUST00000117799 748 ntBASIC16.38■□□□□ 0.21
Upf3bQ3ULL6 Gm12350-201ENSMUST00000121208 462 ntBASIC16.38■□□□□ 0.21
Upf3bQ3ULL6 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC16.38■□□□□ 0.21
Upf3bQ3ULL6 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC16.38■□□□□ 0.21
Upf3bQ3ULL6 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Upf3bQ3ULL6 Gm9682-201ENSMUST00000197505 556 ntBASIC16.38■□□□□ 0.21
Upf3bQ3ULL6 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Upf3bQ3ULL6 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Upf3bQ3ULL6 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Upf3bQ3ULL6 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Upf3bQ3ULL6 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Upf3bQ3ULL6 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Upf3bQ3ULL6 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Upf3bQ3ULL6 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Upf3bQ3ULL6 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Upf3bQ3ULL6 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Upf3bQ3ULL6 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Upf3bQ3ULL6 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Upf3bQ3ULL6 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Upf3bQ3ULL6 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Upf3bQ3ULL6 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Upf3bQ3ULL6 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Upf3bQ3ULL6 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Upf3bQ3ULL6 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Upf3bQ3ULL6 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
Upf3bQ3ULL6 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Upf3bQ3ULL6 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Upf3bQ3ULL6 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC16.37■□□□□ 0.21
Upf3bQ3ULL6 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC16.37■□□□□ 0.21
Upf3bQ3ULL6 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC16.37■□□□□ 0.21
Upf3bQ3ULL6 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Upf3bQ3ULL6 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Upf3bQ3ULL6 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Upf3bQ3ULL6 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Upf3bQ3ULL6 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Upf3bQ3ULL6 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Upf3bQ3ULL6 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Gm11453-201ENSMUST00000117318 1007 ntBASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Gm7556-201ENSMUST00000201178 1084 ntBASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Gm45167-201ENSMUST00000208007 322 ntBASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Gm7787-201ENSMUST00000216858 688 ntBASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Upf3bQ3ULL6 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 38.9 ms