Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Limch1Q3UH68 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Limch1Q3UH68 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Limch1Q3UH68 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
Limch1Q3UH68 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC18.02■□□□□ 0.47
Limch1Q3UH68 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Limch1Q3UH68 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Limch1Q3UH68 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Limch1Q3UH68 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Limch1Q3UH68 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Limch1Q3UH68 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Limch1Q3UH68 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Limch1Q3UH68 AC154412.1-201ENSMUST00000226540 2786 ntBASIC18.01■□□□□ 0.47
Limch1Q3UH68 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Limch1Q3UH68 Gm8097-201ENSMUST00000117903 829 ntBASIC18.01■□□□□ 0.47
Limch1Q3UH68 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Limch1Q3UH68 Gm8655-201ENSMUST00000221159 852 ntBASIC18.01■□□□□ 0.47
Limch1Q3UH68 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC18.01■□□□□ 0.47
Limch1Q3UH68 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Limch1Q3UH68 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Limch1Q3UH68 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Limch1Q3UH68 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
Limch1Q3UH68 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Limch1Q3UH68 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Limch1Q3UH68 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Limch1Q3UH68 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC18.01■□□□□ 0.47
Limch1Q3UH68 Sybu-209ENSMUST00000228639 4113 ntBASIC18■□□□□ 0.47
Limch1Q3UH68 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Limch1Q3UH68 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Limch1Q3UH68 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC18■□□□□ 0.47
Limch1Q3UH68 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC18■□□□□ 0.47
Limch1Q3UH68 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Limch1Q3UH68 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Limch1Q3UH68 Gm8344-201ENSMUST00000119813 856 ntBASIC18■□□□□ 0.47
Limch1Q3UH68 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
Limch1Q3UH68 Gm11780-201ENSMUST00000136880 516 ntBASIC18■□□□□ 0.47
Limch1Q3UH68 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC18■□□□□ 0.47
Limch1Q3UH68 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC18■□□□□ 0.47
Limch1Q3UH68 Gm6550-201ENSMUST00000187574 993 ntBASIC18■□□□□ 0.47
Limch1Q3UH68 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC18■□□□□ 0.47
Limch1Q3UH68 AC154222.1-201ENSMUST00000223882 475 ntBASIC18■□□□□ 0.47
Limch1Q3UH68 AC160980.1-201ENSMUST00000224136 970 ntBASIC18■□□□□ 0.47
Limch1Q3UH68 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Limch1Q3UH68 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC18■□□□□ 0.47
Limch1Q3UH68 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC18■□□□□ 0.47
Limch1Q3UH68 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Limch1Q3UH68 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC18■□□□□ 0.47
Limch1Q3UH68 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Limch1Q3UH68 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Limch1Q3UH68 Gm11839-201ENSMUST00000120647 1953 ntBASIC18■□□□□ 0.47
Limch1Q3UH68 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Limch1Q3UH68 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC18■□□□□ 0.47
Limch1Q3UH68 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Limch1Q3UH68 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC18■□□□□ 0.47
Limch1Q3UH68 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Limch1Q3UH68 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Limch1Q3UH68 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Limch1Q3UH68 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC18■□□□□ 0.47
Limch1Q3UH68 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Limch1Q3UH68 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Limch1Q3UH68 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC18■□□□□ 0.47
Limch1Q3UH68 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Limch1Q3UH68 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Limch1Q3UH68 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Limch1Q3UH68 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Limch1Q3UH68 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Limch1Q3UH68 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Limch1Q3UH68 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC17.99■□□□□ 0.47
Limch1Q3UH68 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Limch1Q3UH68 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Limch1Q3UH68 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Limch1Q3UH68 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Limch1Q3UH68 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Limch1Q3UH68 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Limch1Q3UH68 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Limch1Q3UH68 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC17.99■□□□□ 0.47
Limch1Q3UH68 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Limch1Q3UH68 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Limch1Q3UH68 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Limch1Q3UH68 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Limch1Q3UH68 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Limch1Q3UH68 Gm5837-201ENSMUST00000191844 1369 ntBASIC17.99■□□□□ 0.47
Limch1Q3UH68 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Limch1Q3UH68 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Limch1Q3UH68 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Limch1Q3UH68 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Limch1Q3UH68 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Limch1Q3UH68 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Limch1Q3UH68 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Limch1Q3UH68 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Limch1Q3UH68 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC17.98■□□□□ 0.47
Limch1Q3UH68 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Limch1Q3UH68 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Limch1Q3UH68 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Limch1Q3UH68 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Limch1Q3UH68 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC17.98■□□□□ 0.47
Limch1Q3UH68 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC17.98■□□□□ 0.47
Limch1Q3UH68 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC17.98■□□□□ 0.47
Limch1Q3UH68 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Limch1Q3UH68 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 74.3 ms