Protein–RNA interactions for Protein: Q03358

Msx2, Homeobox protein MSX-2, mousemouse

Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx2Q03358 Gm37055-201ENSMUST00000191866 133 ntBASIC14.91□□□□□ -0.02
Msx2Q03358 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC14.91□□□□□ -0.02
Msx2Q03358 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Msx2Q03358 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC14.91□□□□□ -0.02
Msx2Q03358 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Msx2Q03358 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC14.91□□□□□ -0.02
Msx2Q03358 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC14.91□□□□□ -0.02
Msx2Q03358 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Msx2Q03358 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Msx2Q03358 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC14.91□□□□□ -0.02
Msx2Q03358 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Msx2Q03358 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Msx2Q03358 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Msx2Q03358 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Msx2Q03358 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Msx2Q03358 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
Msx2Q03358 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Msx2Q03358 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Msx2Q03358 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Msx2Q03358 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC14.9□□□□□ -0.02
Msx2Q03358 Gm43509-201ENSMUST00000196551 2594 ntBASIC14.9□□□□□ -0.02
Msx2Q03358 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Msx2Q03358 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Msx2Q03358 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Msx2Q03358 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Msx2Q03358 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
Msx2Q03358 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Msx2Q03358 Gm44291-201ENSMUST00000203102 2865 ntBASIC14.9□□□□□ -0.02
Msx2Q03358 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Msx2Q03358 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Msx2Q03358 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Msx2Q03358 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Msx2Q03358 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Msx2Q03358 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC14.89□□□□□ -0.03
Msx2Q03358 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC14.89□□□□□ -0.03
Msx2Q03358 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Msx2Q03358 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Msx2Q03358 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Msx2Q03358 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Msx2Q03358 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC14.89□□□□□ -0.03
Msx2Q03358 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Msx2Q03358 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC14.89□□□□□ -0.03
Msx2Q03358 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Msx2Q03358 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Msx2Q03358 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC14.89□□□□□ -0.03
Msx2Q03358 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Msx2Q03358 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Msx2Q03358 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Msx2Q03358 Gm14780-201ENSMUST00000118387 2737 ntBASIC14.89□□□□□ -0.03
Msx2Q03358 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC14.89□□□□□ -0.03
Msx2Q03358 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Msx2Q03358 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Msx2Q03358 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Msx2Q03358 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Msx2Q03358 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Msx2Q03358 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Msx2Q03358 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx2Q03358 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx2Q03358 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Msx2Q03358 Nupl1-207ENSMUST00000225311 2475 ntBASIC14.88□□□□□ -0.03
Msx2Q03358 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx2Q03358 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Msx2Q03358 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Msx2Q03358 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx2Q03358 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx2Q03358 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx2Q03358 Gm7889-201ENSMUST00000185591 958 ntBASIC14.88□□□□□ -0.03
Msx2Q03358 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC14.88□□□□□ -0.03
Msx2Q03358 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx2Q03358 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx2Q03358 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Msx2Q03358 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx2Q03358 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx2Q03358 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx2Q03358 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Msx2Q03358 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx2Q03358 Prkcz2-201ENSMUST00000206136 1756 ntBASIC14.88□□□□□ -0.03
Msx2Q03358 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Msx2Q03358 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Msx2Q03358 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msx2Q03358 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msx2Q03358 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msx2Q03358 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msx2Q03358 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msx2Q03358 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Msx2Q03358 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msx2Q03358 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Msx2Q03358 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Msx2Q03358 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Msx2Q03358 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msx2Q03358 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Msx2Q03358 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Msx2Q03358 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msx2Q03358 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msx2Q03358 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msx2Q03358 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Msx2Q03358 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msx2Q03358 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Msx2Q03358 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC14.87□□□□□ -0.03
Msx2Q03358 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms