Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col8a1Q00780 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Col8a1Q00780 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col8a1Q00780 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Col8a1Q00780 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col8a1Q00780 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
Col8a1Q00780 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC13.05□□□□□ -0.32
Col8a1Q00780 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC13.05□□□□□ -0.32
Col8a1Q00780 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC13.05□□□□□ -0.32
Col8a1Q00780 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
Col8a1Q00780 Gm27618-201ENSMUST00000183671 60 ntBASIC13.05□□□□□ -0.32
Col8a1Q00780 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC13.05□□□□□ -0.32
Col8a1Q00780 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC13.05□□□□□ -0.32
Col8a1Q00780 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Col8a1Q00780 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC13.05□□□□□ -0.32
Col8a1Q00780 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col8a1Q00780 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Col8a1Q00780 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Col8a1Q00780 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Col8a1Q00780 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col8a1Q00780 AC119177.1-201ENSMUST00000227647 1332 ntBASIC13.05□□□□□ -0.32
Col8a1Q00780 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col8a1Q00780 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col8a1Q00780 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col8a1Q00780 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col8a1Q00780 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col8a1Q00780 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col8a1Q00780 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Col8a1Q00780 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Col8a1Q00780 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col8a1Q00780 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Col8a1Q00780 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC13.04□□□□□ -0.32
Col8a1Q00780 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col8a1Q00780 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Col8a1Q00780 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col8a1Q00780 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col8a1Q00780 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Col8a1Q00780 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col8a1Q00780 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col8a1Q00780 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col8a1Q00780 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Col8a1Q00780 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Col8a1Q00780 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Col8a1Q00780 Gm18057-201ENSMUST00000208220 503 ntBASIC13.04□□□□□ -0.32
Col8a1Q00780 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC13.04□□□□□ -0.32
Col8a1Q00780 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC13.04□□□□□ -0.32
Col8a1Q00780 Wdyhv1-203ENSMUST00000226889 394 ntBASIC13.04□□□□□ -0.32
Col8a1Q00780 AC132467.2-202ENSMUST00000227726 559 ntBASIC13.04□□□□□ -0.32
Col8a1Q00780 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col8a1Q00780 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Col8a1Q00780 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col8a1Q00780 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC13.04□□□□□ -0.32
Col8a1Q00780 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Col8a1Q00780 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col8a1Q00780 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Col8a1Q00780 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Col8a1Q00780 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Col8a1Q00780 Gm20628-201ENSMUST00000177363 3215 ntBASIC13.03□□□□□ -0.32
Col8a1Q00780 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col8a1Q00780 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col8a1Q00780 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col8a1Q00780 Gm29361-201ENSMUST00000183323 2000 ntBASIC13.03□□□□□ -0.32
Col8a1Q00780 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col8a1Q00780 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col8a1Q00780 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col8a1Q00780 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col8a1Q00780 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col8a1Q00780 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col8a1Q00780 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col8a1Q00780 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC13.03□□□□□ -0.32
Col8a1Q00780 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC13.03□□□□□ -0.32
Col8a1Q00780 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Col8a1Q00780 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC13.03□□□□□ -0.32
Col8a1Q00780 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC13.03□□□□□ -0.32
Col8a1Q00780 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC13.03□□□□□ -0.32
Col8a1Q00780 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Col8a1Q00780 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC13.03□□□□□ -0.32
Col8a1Q00780 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Col8a1Q00780 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC13.03□□□□□ -0.32
Col8a1Q00780 Cdk7-205ENSMUST00000225990 1159 ntBASIC13.03□□□□□ -0.32
Col8a1Q00780 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Col8a1Q00780 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col8a1Q00780 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col8a1Q00780 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Col8a1Q00780 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Col8a1Q00780 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.32
Col8a1Q00780 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col8a1Q00780 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col8a1Q00780 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col8a1Q00780 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col8a1Q00780 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col8a1Q00780 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col8a1Q00780 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col8a1Q00780 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Col8a1Q00780 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC13.02□□□□□ -0.32
Col8a1Q00780 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
Col8a1Q00780 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Col8a1Q00780 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
Col8a1Q00780 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Col8a1Q00780 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms