Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC16.87■□□□□ 0.29
Hmgb1P63158 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Hmgb1P63158 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Hmgb1P63158 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb1P63158 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb1P63158 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb1P63158 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb1P63158 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb1P63158 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb1P63158 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb1P63158 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb1P63158 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb1P63158 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
Hmgb1P63158 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
Hmgb1P63158 Gm14859-201ENSMUST00000117752 357 ntBASIC16.86■□□□□ 0.29
Hmgb1P63158 Gm12895-201ENSMUST00000122214 226 ntBASIC16.86■□□□□ 0.29
Hmgb1P63158 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb1P63158 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC16.86■□□□□ 0.29
Hmgb1P63158 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC16.86■□□□□ 0.29
Hmgb1P63158 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb1P63158 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC16.86■□□□□ 0.29
Hmgb1P63158 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb1P63158 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb1P63158 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb1P63158 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb1P63158 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb1P63158 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb1P63158 AC174678.1-201ENSMUST00000228007 2749 ntBASIC16.86■□□□□ 0.29
Hmgb1P63158 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb1P63158 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb1P63158 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
Hmgb1P63158 Kif2a-202ENSMUST00000117423 2023 ntTSL 5 BASIC16.86■□□□□ 0.29
Hmgb1P63158 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb1P63158 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb1P63158 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb1P63158 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb1P63158 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb1P63158 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb1P63158 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC16.85■□□□□ 0.29
Hmgb1P63158 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb1P63158 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb1P63158 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Hmgb1P63158 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb1P63158 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC16.85■□□□□ 0.29
Hmgb1P63158 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb1P63158 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb1P63158 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC16.85■□□□□ 0.29
Hmgb1P63158 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
Hmgb1P63158 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb1P63158 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb1P63158 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC16.85■□□□□ 0.29
Hmgb1P63158 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb1P63158 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb1P63158 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb1P63158 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb1P63158 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb1P63158 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb1P63158 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb1P63158 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb1P63158 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb1P63158 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb1P63158 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC16.85■□□□□ 0.29
Hmgb1P63158 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb1P63158 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb1P63158 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb1P63158 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb1P63158 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb1P63158 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Hmgb1P63158 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb1P63158 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb1P63158 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC16.84■□□□□ 0.29
Hmgb1P63158 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC16.84■□□□□ 0.29
Hmgb1P63158 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
Hmgb1P63158 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC16.84■□□□□ 0.29
Hmgb1P63158 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb1P63158 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb1P63158 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb1P63158 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb1P63158 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb1P63158 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb1P63158 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
Hmgb1P63158 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb1P63158 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb1P63158 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb1P63158 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb1P63158 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb1P63158 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb1P63158 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
Hmgb1P63158 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb1P63158 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC16.83■□□□□ 0.29
Hmgb1P63158 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Hmgb1P63158 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
Hmgb1P63158 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Hmgb1P63158 Gm15358-201ENSMUST00000119249 520 ntBASIC16.83■□□□□ 0.28
Hmgb1P63158 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC16.83■□□□□ 0.28
Hmgb1P63158 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Hmgb1P63158 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC16.83■□□□□ 0.28
Hmgb1P63158 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Hmgb1P63158 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Hmgb1P63158 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms