Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ercc3P49135 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ercc3P49135 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ercc3P49135 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ercc3P49135 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Ercc3P49135 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ercc3P49135 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC18.18■□□□□ 0.5
Ercc3P49135 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC18.18■□□□□ 0.5
Ercc3P49135 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC18.18■□□□□ 0.5
Ercc3P49135 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Ercc3P49135 Gm5253-201ENSMUST00000187104 1025 ntBASIC18.18■□□□□ 0.5
Ercc3P49135 Gm18206-201ENSMUST00000207027 926 ntBASIC18.18■□□□□ 0.5
Ercc3P49135 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ercc3P49135 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ercc3P49135 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Ercc3P49135 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ercc3P49135 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Ercc3P49135 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ercc3P49135 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ercc3P49135 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ercc3P49135 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ercc3P49135 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
Ercc3P49135 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ercc3P49135 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Ercc3P49135 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ercc3P49135 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Ercc3P49135 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Ercc3P49135 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC18.17■□□□□ 0.5
Ercc3P49135 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Ercc3P49135 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Ercc3P49135 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC18.17■□□□□ 0.5
Ercc3P49135 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ercc3P49135 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ercc3P49135 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ercc3P49135 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Ercc3P49135 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ercc3P49135 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Ercc3P49135 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC18.17■□□□□ 0.5
Ercc3P49135 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC18.16■□□□□ 0.5
Ercc3P49135 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ercc3P49135 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ercc3P49135 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Ercc3P49135 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC18.16■□□□□ 0.5
Ercc3P49135 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ercc3P49135 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ercc3P49135 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ercc3P49135 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ercc3P49135 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC18.16■□□□□ 0.5
Ercc3P49135 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC18.16■□□□□ 0.5
Ercc3P49135 Gm9682-201ENSMUST00000197505 556 ntBASIC18.16■□□□□ 0.5
Ercc3P49135 AC151836.1-202ENSMUST00000226259 753 ntBASIC18.16■□□□□ 0.5
Ercc3P49135 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ercc3P49135 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ercc3P49135 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ercc3P49135 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ercc3P49135 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ercc3P49135 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ercc3P49135 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
Ercc3P49135 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ercc3P49135 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ercc3P49135 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ercc3P49135 Gm44616-201ENSMUST00000206417 1732 ntBASIC18.15■□□□□ 0.5
Ercc3P49135 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ercc3P49135 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ercc3P49135 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC18.15■□□□□ 0.5
Ercc3P49135 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Ercc3P49135 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC18.15■□□□□ 0.5
Ercc3P49135 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ercc3P49135 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ercc3P49135 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ercc3P49135 Gm43935-201ENSMUST00000203569 1050 ntBASIC18.15■□□□□ 0.5
Ercc3P49135 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC18.15■□□□□ 0.5
Ercc3P49135 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ercc3P49135 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ercc3P49135 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
Ercc3P49135 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ercc3P49135 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ercc3P49135 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC18.14■□□□□ 0.5
Ercc3P49135 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
Ercc3P49135 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
Ercc3P49135 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ercc3P49135 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ercc3P49135 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ercc3P49135 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ercc3P49135 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ercc3P49135 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ercc3P49135 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC18.14■□□□□ 0.49
Ercc3P49135 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ercc3P49135 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ercc3P49135 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ercc3P49135 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ercc3P49135 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ercc3P49135 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Ercc3P49135 Gm38318-201ENSMUST00000195769 1706 ntBASIC18.14■□□□□ 0.49
Ercc3P49135 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC18.14■□□□□ 0.49
Ercc3P49135 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ercc3P49135 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Ercc3P49135 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ercc3P49135 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Ercc3P49135 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 33.9 ms