Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Rfx1P48377 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rfx1P48377 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rfx1P48377 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rfx1P48377 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC18.32■□□□□ 0.52
Rfx1P48377 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rfx1P48377 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rfx1P48377 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rfx1P48377 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rfx1P48377 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rfx1P48377 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rfx1P48377 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rfx1P48377 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rfx1P48377 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rfx1P48377 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC18.31■□□□□ 0.52
Rfx1P48377 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
Rfx1P48377 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rfx1P48377 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Rfx1P48377 Gm14780-201ENSMUST00000118387 2737 ntBASIC18.31■□□□□ 0.52
Rfx1P48377 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rfx1P48377 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
Rfx1P48377 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rfx1P48377 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rfx1P48377 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rfx1P48377 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Rfx1P48377 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Rfx1P48377 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Rfx1P48377 Gm38058-201ENSMUST00000194323 4368 ntBASIC18.3■□□□□ 0.52
Rfx1P48377 Gm5049-201ENSMUST00000195878 1590 ntBASIC18.3■□□□□ 0.52
Rfx1P48377 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rfx1P48377 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rfx1P48377 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Rfx1P48377 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rfx1P48377 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Rfx1P48377 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rfx1P48377 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Rfx1P48377 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC18.3■□□□□ 0.52
Rfx1P48377 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC18.3■□□□□ 0.52
Rfx1P48377 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Rfx1P48377 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Rfx1P48377 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rfx1P48377 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rfx1P48377 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Rfx1P48377 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Rfx1P48377 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rfx1P48377 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rfx1P48377 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rfx1P48377 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rfx1P48377 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Rfx1P48377 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rfx1P48377 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rfx1P48377 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rfx1P48377 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rfx1P48377 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Rfx1P48377 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rfx1P48377 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rfx1P48377 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC18.29■□□□□ 0.52
Rfx1P48377 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
Rfx1P48377 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
Rfx1P48377 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rfx1P48377 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Rfx1P48377 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rfx1P48377 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rfx1P48377 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rfx1P48377 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rfx1P48377 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
Rfx1P48377 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rfx1P48377 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC18.29■□□□□ 0.52
Rfx1P48377 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rfx1P48377 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Rfx1P48377 Gm6433-201ENSMUST00000118634 875 ntBASIC18.29■□□□□ 0.52
Rfx1P48377 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC18.29■□□□□ 0.52
Rfx1P48377 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Rfx1P48377 Gm8349-201ENSMUST00000182720 1003 ntBASIC18.29■□□□□ 0.52
Rfx1P48377 AC130713.1-201ENSMUST00000228853 1096 ntBASIC18.29■□□□□ 0.52
Rfx1P48377 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rfx1P48377 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rfx1P48377 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rfx1P48377 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Rfx1P48377 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Rfx1P48377 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Rfx1P48377 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rfx1P48377 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Rfx1P48377 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rfx1P48377 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rfx1P48377 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rfx1P48377 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rfx1P48377 Gm37297-201ENSMUST00000192974 2384 ntBASIC18.28■□□□□ 0.52
Rfx1P48377 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rfx1P48377 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rfx1P48377 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rfx1P48377 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rfx1P48377 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rfx1P48377 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rfx1P48377 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rfx1P48377 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rfx1P48377 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rfx1P48377 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC18.28■□□□□ 0.52
Rfx1P48377 Gm6345-202ENSMUST00000180900 204 ntBASIC18.28■□□□□ 0.52
Rfx1P48377 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms