Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Sdc1P18828 Ntrk2-209ENSMUST00000225950 2640 ntBASIC12.61□□□□□ -0.39
Sdc1P18828 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sdc1P18828 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sdc1P18828 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sdc1P18828 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sdc1P18828 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Sdc1P18828 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sdc1P18828 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Sdc1P18828 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sdc1P18828 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Sdc1P18828 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sdc1P18828 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sdc1P18828 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Sdc1P18828 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sdc1P18828 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sdc1P18828 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Sdc1P18828 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sdc1P18828 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC12.6□□□□□ -0.39
Sdc1P18828 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Sdc1P18828 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sdc1P18828 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Sdc1P18828 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC12.6□□□□□ -0.39
Sdc1P18828 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sdc1P18828 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Sdc1P18828 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sdc1P18828 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sdc1P18828 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sdc1P18828 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sdc1P18828 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sdc1P18828 Gm12085-201ENSMUST00000119263 940 ntBASIC12.6□□□□□ -0.39
Sdc1P18828 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sdc1P18828 Mir5133-201ENSMUST00000174955 77 ntBASIC12.6□□□□□ -0.39
Sdc1P18828 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sdc1P18828 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sdc1P18828 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sdc1P18828 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sdc1P18828 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC12.6□□□□□ -0.39
Sdc1P18828 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC12.6□□□□□ -0.39
Sdc1P18828 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sdc1P18828 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sdc1P18828 AC132265.1-201ENSMUST00000219233 1665 ntBASIC12.6□□□□□ -0.39
Sdc1P18828 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sdc1P18828 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sdc1P18828 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Sdc1P18828 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sdc1P18828 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sdc1P18828 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sdc1P18828 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Sdc1P18828 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sdc1P18828 Gm14780-201ENSMUST00000118387 2737 ntBASIC12.6□□□□□ -0.39
Sdc1P18828 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sdc1P18828 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sdc1P18828 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC12.59□□□□□ -0.39
Sdc1P18828 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Sdc1P18828 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Sdc1P18828 AC124581.1-201ENSMUST00000225416 1399 ntBASIC12.59□□□□□ -0.39
Sdc1P18828 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sdc1P18828 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sdc1P18828 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sdc1P18828 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
Sdc1P18828 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sdc1P18828 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sdc1P18828 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Sdc1P18828 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC12.59□□□□□ -0.39
Sdc1P18828 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC12.59□□□□□ -0.39
Sdc1P18828 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC12.59□□□□□ -0.39
Sdc1P18828 Gm38027-201ENSMUST00000192315 235 ntBASIC12.59□□□□□ -0.39
Sdc1P18828 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC12.59□□□□□ -0.39
Sdc1P18828 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC12.59□□□□□ -0.39
Sdc1P18828 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sdc1P18828 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sdc1P18828 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sdc1P18828 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC12.59□□□□□ -0.39
Sdc1P18828 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sdc1P18828 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Sdc1P18828 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sdc1P18828 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sdc1P18828 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Sdc1P18828 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sdc1P18828 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Sdc1P18828 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Sdc1P18828 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
Sdc1P18828 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Sdc1P18828 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sdc1P18828 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sdc1P18828 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sdc1P18828 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sdc1P18828 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Sdc1P18828 Gm38577-201ENSMUST00000221531 4545 ntBASIC12.59□□□□□ -0.39
Sdc1P18828 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Sdc1P18828 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Sdc1P18828 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Sdc1P18828 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.39
Sdc1P18828 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Sdc1P18828 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
Sdc1P18828 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.39
Sdc1P18828 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC12.58□□□□□ -0.39
Sdc1P18828 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sdc1P18828 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms