Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm45244-201ENSMUST00000211328 2200 ntBASIC17.76■□□□□ 0.43
Col1a1P11087 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col1a1P11087 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col1a1P11087 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col1a1P11087 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col1a1P11087 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC17.76■□□□□ 0.43
Col1a1P11087 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Col1a1P11087 Ighv5-13-201ENSMUST00000193550 290 ntBASIC17.75■□□□□ 0.43
Col1a1P11087 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC17.75■□□□□ 0.43
Col1a1P11087 AC238811.1-201ENSMUST00000225302 441 ntBASIC17.75■□□□□ 0.43
Col1a1P11087 AC154239.3-201ENSMUST00000226933 674 ntBASIC17.75■□□□□ 0.43
Col1a1P11087 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC17.75■□□□□ 0.43
Col1a1P11087 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col1a1P11087 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col1a1P11087 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col1a1P11087 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col1a1P11087 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col1a1P11087 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col1a1P11087 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col1a1P11087 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC17.75■□□□□ 0.43
Col1a1P11087 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col1a1P11087 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col1a1P11087 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
Col1a1P11087 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Col1a1P11087 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col1a1P11087 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC17.75■□□□□ 0.43
Col1a1P11087 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col1a1P11087 Gm29667-201ENSMUST00000190817 490 ntBASIC17.75■□□□□ 0.43
Col1a1P11087 Gm8515-201ENSMUST00000194852 576 ntBASIC17.75■□□□□ 0.43
Col1a1P11087 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col1a1P11087 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col1a1P11087 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col1a1P11087 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col1a1P11087 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col1a1P11087 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col1a1P11087 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col1a1P11087 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col1a1P11087 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col1a1P11087 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC17.74■□□□□ 0.43
Col1a1P11087 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col1a1P11087 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col1a1P11087 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col1a1P11087 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC17.74■□□□□ 0.43
Col1a1P11087 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
Col1a1P11087 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Col1a1P11087 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Col1a1P11087 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC17.74■□□□□ 0.43
Col1a1P11087 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col1a1P11087 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
Col1a1P11087 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col1a1P11087 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col1a1P11087 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Col1a1P11087 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Col1a1P11087 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col1a1P11087 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col1a1P11087 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Col1a1P11087 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col1a1P11087 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col1a1P11087 Gm5357-201ENSMUST00000212720 1924 ntBASIC17.73■□□□□ 0.43
Col1a1P11087 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col1a1P11087 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col1a1P11087 Gm22189-201ENSMUST00000103822 86 ntBASIC17.73■□□□□ 0.43
Col1a1P11087 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC17.73■□□□□ 0.43
Col1a1P11087 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col1a1P11087 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC17.73■□□□□ 0.43
Col1a1P11087 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC17.73■□□□□ 0.43
Col1a1P11087 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Col1a1P11087 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col1a1P11087 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col1a1P11087 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col1a1P11087 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Col1a1P11087 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Col1a1P11087 Gm5320-201ENSMUST00000207163 1519 ntBASIC17.73■□□□□ 0.43
Col1a1P11087 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col1a1P11087 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col1a1P11087 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col1a1P11087 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col1a1P11087 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC17.72■□□□□ 0.43
Col1a1P11087 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col1a1P11087 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col1a1P11087 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col1a1P11087 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col1a1P11087 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col1a1P11087 Gm42473-201ENSMUST00000201056 2291 ntBASIC17.72■□□□□ 0.43
Col1a1P11087 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col1a1P11087 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Col1a1P11087 Gm4204-201ENSMUST00000110798 1231 ntBASIC17.72■□□□□ 0.43
Col1a1P11087 Gm14928-201ENSMUST00000120198 477 ntBASIC17.72■□□□□ 0.43
Col1a1P11087 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC17.72■□□□□ 0.43
Col1a1P11087 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Col1a1P11087 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Col1a1P11087 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Col1a1P11087 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC17.72■□□□□ 0.43
Col1a1P11087 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Col1a1P11087 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Col1a1P11087 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col1a1P11087 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col1a1P11087 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col1a1P11087 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col1a1P11087 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms