Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Hoxd3P09027 Gm5867-201ENSMUST00000063197 592 ntBASIC11.93□□□□□ -0.5
Hoxd3P09027 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Hoxd3P09027 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Hoxd3P09027 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Gm10701-201ENSMUST00000098926 906 ntTSL 2 BASIC11.93□□□□□ -0.5
Hoxd3P09027 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC11.93□□□□□ -0.5
Hoxd3P09027 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Hoxd3P09027 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hoxd3P09027 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hoxd3P09027 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hoxd3P09027 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hoxd3P09027 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hoxd3P09027 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
Hoxd3P09027 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hoxd3P09027 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Hoxd3P09027 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Hoxd3P09027 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Hoxd3P09027 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hoxd3P09027 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hoxd3P09027 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hoxd3P09027 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hoxd3P09027 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Hoxd3P09027 Gm14494-201ENSMUST00000118786 435 ntBASIC11.92□□□□□ -0.5
Hoxd3P09027 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Hoxd3P09027 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC11.92□□□□□ -0.5
Hoxd3P09027 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC11.92□□□□□ -0.5
Hoxd3P09027 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC11.92□□□□□ -0.5
Hoxd3P09027 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC11.92□□□□□ -0.5
Hoxd3P09027 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Hoxd3P09027 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Hoxd3P09027 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC11.92□□□□□ -0.5
Hoxd3P09027 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Hoxd3P09027 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC11.92□□□□□ -0.5
Hoxd3P09027 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hoxd3P09027 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hoxd3P09027 Gm7669-201ENSMUST00000210184 1603 ntBASIC11.92□□□□□ -0.5
Hoxd3P09027 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hoxd3P09027 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hoxd3P09027 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hoxd3P09027 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hoxd3P09027 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Hoxd3P09027 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC11.92□□□□□ -0.5
Hoxd3P09027 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hoxd3P09027 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hoxd3P09027 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hoxd3P09027 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hoxd3P09027 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hoxd3P09027 Gm29590-201ENSMUST00000190396 1304 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Hoxd3P09027 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Hoxd3P09027 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hoxd3P09027 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hoxd3P09027 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Hoxd3P09027 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hoxd3P09027 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC11.91□□□□□ -0.5
Hoxd3P09027 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC11.91□□□□□ -0.5
Hoxd3P09027 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC11.91□□□□□ -0.5
Hoxd3P09027 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Hoxd3P09027 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC11.91□□□□□ -0.5
Hoxd3P09027 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
Hoxd3P09027 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Hoxd3P09027 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC11.91□□□□□ -0.5
Hoxd3P09027 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC11.91□□□□□ -0.5
Hoxd3P09027 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC11.91□□□□□ -0.5
Hoxd3P09027 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
Hoxd3P09027 AC147366.1-201ENSMUST00000227671 852 ntBASIC11.91□□□□□ -0.5
Hoxd3P09027 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Hoxd3P09027 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hoxd3P09027 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hoxd3P09027 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Hoxd3P09027 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Hoxd3P09027 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hoxd3P09027 Ntrk2-205ENSMUST00000224402 2284 ntBASIC11.91□□□□□ -0.5
Hoxd3P09027 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hoxd3P09027 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Hoxd3P09027 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hoxd3P09027 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Hoxd3P09027 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hoxd3P09027 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hoxd3P09027 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hoxd3P09027 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hoxd3P09027 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Hoxd3P09027 Gm44645-201ENSMUST00000205492 1653 ntBASIC11.91□□□□□ -0.5
Hoxd3P09027 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Hoxd3P09027 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Hoxd3P09027 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Hoxd3P09027 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 62.2 ms