Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col3a1P08121 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col3a1P08121 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col3a1P08121 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col3a1P08121 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC18.12■□□□□ 0.49
Col3a1P08121 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Col3a1P08121 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Col3a1P08121 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col3a1P08121 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col3a1P08121 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col3a1P08121 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC18.12■□□□□ 0.49
Col3a1P08121 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col3a1P08121 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col3a1P08121 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col3a1P08121 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col3a1P08121 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col3a1P08121 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Col3a1P08121 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Col3a1P08121 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Col3a1P08121 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Col3a1P08121 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC18.11■□□□□ 0.49
Col3a1P08121 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Col3a1P08121 Gm37277-201ENSMUST00000194052 1111 ntBASIC18.11■□□□□ 0.49
Col3a1P08121 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Col3a1P08121 Gm20949-201ENSMUST00000206478 952 ntBASIC18.11■□□□□ 0.49
Col3a1P08121 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC18.11■□□□□ 0.49
Col3a1P08121 Rbfox2-208ENSMUST00000227930 1218 ntBASIC18.11■□□□□ 0.49
Col3a1P08121 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col3a1P08121 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col3a1P08121 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
Col3a1P08121 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col3a1P08121 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col3a1P08121 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col3a1P08121 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Col3a1P08121 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC18.1■□□□□ 0.49
Col3a1P08121 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col3a1P08121 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col3a1P08121 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC18.1■□□□□ 0.49
Col3a1P08121 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col3a1P08121 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Col3a1P08121 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC18.1■□□□□ 0.49
Col3a1P08121 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Col3a1P08121 Gm38225-201ENSMUST00000194001 393 ntBASIC18.1■□□□□ 0.49
Col3a1P08121 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col3a1P08121 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col3a1P08121 Mxra8os-201ENSMUST00000097740 687 ntBASIC18.1■□□□□ 0.49
Col3a1P08121 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col3a1P08121 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col3a1P08121 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Col3a1P08121 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Col3a1P08121 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col3a1P08121 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col3a1P08121 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col3a1P08121 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Col3a1P08121 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col3a1P08121 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col3a1P08121 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Col3a1P08121 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC18.09■□□□□ 0.49
Col3a1P08121 Gm6415-201ENSMUST00000118488 348 ntBASIC18.09■□□□□ 0.49
Col3a1P08121 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col3a1P08121 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC18.09■□□□□ 0.49
Col3a1P08121 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC18.09■□□□□ 0.49
Col3a1P08121 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC18.09■□□□□ 0.49
Col3a1P08121 Gm28630-201ENSMUST00000187806 498 ntBASIC18.09■□□□□ 0.49
Col3a1P08121 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC18.09■□□□□ 0.49
Col3a1P08121 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col3a1P08121 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col3a1P08121 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col3a1P08121 Gm10313-201ENSMUST00000095320 1002 ntBASIC18.09■□□□□ 0.49
Col3a1P08121 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC18.09■□□□□ 0.49
Col3a1P08121 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col3a1P08121 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col3a1P08121 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Col3a1P08121 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Col3a1P08121 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col3a1P08121 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
Col3a1P08121 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col3a1P08121 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col3a1P08121 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Col3a1P08121 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col3a1P08121 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col3a1P08121 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
Col3a1P08121 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Col3a1P08121 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Col3a1P08121 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Col3a1P08121 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC18.08■□□□□ 0.49
Col3a1P08121 Gm27618-201ENSMUST00000183671 60 ntBASIC18.08■□□□□ 0.49
Col3a1P08121 Gm27430-201ENSMUST00000184585 107 ntBASIC18.08■□□□□ 0.49
Col3a1P08121 Gm44333-201ENSMUST00000197168 107 ntBASIC18.08■□□□□ 0.49
Col3a1P08121 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC18.08■□□□□ 0.49
Col3a1P08121 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Col3a1P08121 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Col3a1P08121 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
Col3a1P08121 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Col3a1P08121 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
Col3a1P08121 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Col3a1P08121 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Col3a1P08121 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Col3a1P08121 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Col3a1P08121 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 48.1 ms