Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Scn11aQ9R053 Gm15593-201ENSMUST00000122085 1008 ntBASIC18.01■□□□□ 0.47
Scn11aQ9R053 Ighv8-7-201ENSMUST00000194349 297 ntBASIC18.01■□□□□ 0.47
Scn11aQ9R053 Gm27528-202ENSMUST00000222916 2012 ntBASIC18■□□□□ 0.47
Scn11aQ9R053 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Scn11aQ9R053 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Scn11aQ9R053 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC18■□□□□ 0.47
Scn11aQ9R053 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
Scn11aQ9R053 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Scn11aQ9R053 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Scn11aQ9R053 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC18■□□□□ 0.47
Scn11aQ9R053 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Scn11aQ9R053 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Scn11aQ9R053 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Scn11aQ9R053 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC18■□□□□ 0.47
Scn11aQ9R053 Gm10313-201ENSMUST00000095320 1002 ntBASIC18■□□□□ 0.47
Scn11aQ9R053 Mxra8os-201ENSMUST00000097740 687 ntBASIC18■□□□□ 0.47
Scn11aQ9R053 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Scn11aQ9R053 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
Scn11aQ9R053 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Scn11aQ9R053 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Scn11aQ9R053 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Scn11aQ9R053 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Scn11aQ9R053 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Scn11aQ9R053 Tfap2a-203ENSMUST00000223869 2037 ntBASIC18■□□□□ 0.47
Scn11aQ9R053 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Scn11aQ9R053 AC164565.1-201ENSMUST00000217520 1484 ntBASIC17.99■□□□□ 0.47
Scn11aQ9R053 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC17.99■□□□□ 0.47
Scn11aQ9R053 Gm43433-201ENSMUST00000196573 481 ntBASIC17.99■□□□□ 0.47
Scn11aQ9R053 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC17.99■□□□□ 0.47
Scn11aQ9R053 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Scn11aQ9R053 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Scn11aQ9R053 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC17.99■□□□□ 0.47
Scn11aQ9R053 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Scn11aQ9R053 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Scn11aQ9R053 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Scn11aQ9R053 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC17.99■□□□□ 0.47
Scn11aQ9R053 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Scn11aQ9R053 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Scn11aQ9R053 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Scn11aQ9R053 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Scn11aQ9R053 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Scn11aQ9R053 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Scn11aQ9R053 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Scn11aQ9R053 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Scn11aQ9R053 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Scn11aQ9R053 Gm6415-201ENSMUST00000118488 348 ntBASIC17.99■□□□□ 0.47
Scn11aQ9R053 Gm12490-201ENSMUST00000120255 560 ntBASIC17.99■□□□□ 0.47
Scn11aQ9R053 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Scn11aQ9R053 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Scn11aQ9R053 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Scn11aQ9R053 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC17.99■□□□□ 0.47
Scn11aQ9R053 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Scn11aQ9R053 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Scn11aQ9R053 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Scn11aQ9R053 Gm8242-201ENSMUST00000193029 1420 ntBASIC17.98■□□□□ 0.47
Scn11aQ9R053 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Scn11aQ9R053 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Scn11aQ9R053 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Scn11aQ9R053 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Scn11aQ9R053 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Scn11aQ9R053 Gm13464-201ENSMUST00000119418 935 ntBASIC17.98■□□□□ 0.47
Scn11aQ9R053 Gm27618-201ENSMUST00000183671 60 ntBASIC17.98■□□□□ 0.47
Scn11aQ9R053 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC17.98■□□□□ 0.47
Scn11aQ9R053 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC17.98■□□□□ 0.47
Scn11aQ9R053 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC17.98■□□□□ 0.47
Scn11aQ9R053 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Scn11aQ9R053 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Scn11aQ9R053 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Scn11aQ9R053 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Scn11aQ9R053 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Scn11aQ9R053 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Scn11aQ9R053 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Scn11aQ9R053 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
Scn11aQ9R053 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Scn11aQ9R053 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Scn11aQ9R053 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Scn11aQ9R053 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC17.97■□□□□ 0.47
Scn11aQ9R053 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC17.97■□□□□ 0.47
Scn11aQ9R053 Gm5479-201ENSMUST00000160578 435 ntBASIC17.97■□□□□ 0.47
Scn11aQ9R053 Gm27680-201ENSMUST00000184192 160 ntBASIC17.97■□□□□ 0.47
Scn11aQ9R053 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Scn11aQ9R053 AC132467.2-202ENSMUST00000227726 559 ntBASIC17.97■□□□□ 0.47
Scn11aQ9R053 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Scn11aQ9R053 Rassf8-202ENSMUST00000058538 1131 ntBASIC17.97■□□□□ 0.47
Scn11aQ9R053 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Scn11aQ9R053 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Scn11aQ9R053 AC159621.2-201ENSMUST00000223519 1326 ntBASIC17.97■□□□□ 0.47
Scn11aQ9R053 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Scn11aQ9R053 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Scn11aQ9R053 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Scn11aQ9R053 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Scn11aQ9R053 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Scn11aQ9R053 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Scn11aQ9R053 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Scn11aQ9R053 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Scn11aQ9R053 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC17.96■□□□□ 0.47
Scn11aQ9R053 Gm6007-201ENSMUST00000208170 823 ntBASIC17.96■□□□□ 0.47
Scn11aQ9R053 Gm7730-201ENSMUST00000212486 454 ntBASIC17.96■□□□□ 0.47
Scn11aQ9R053 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms