Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim54Q9ERP3 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim54Q9ERP3 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Trim54Q9ERP3 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trim54Q9ERP3 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trim54Q9ERP3 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trim54Q9ERP3 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trim54Q9ERP3 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trim54Q9ERP3 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trim54Q9ERP3 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trim54Q9ERP3 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trim54Q9ERP3 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Trim54Q9ERP3 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim54Q9ERP3 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Trim54Q9ERP3 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim54Q9ERP3 Gm13365-201ENSMUST00000121188 973 ntBASIC16.58■□□□□ 0.24
Trim54Q9ERP3 Auts2-212ENSMUST00000178555 309 ntBASIC16.58■□□□□ 0.24
Trim54Q9ERP3 AC160980.1-201ENSMUST00000224136 970 ntBASIC16.58■□□□□ 0.24
Trim54Q9ERP3 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim54Q9ERP3 Gm8396-201ENSMUST00000057361 823 ntBASIC16.58■□□□□ 0.24
Trim54Q9ERP3 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim54Q9ERP3 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
Trim54Q9ERP3 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim54Q9ERP3 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
Trim54Q9ERP3 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Trim54Q9ERP3 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim54Q9ERP3 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim54Q9ERP3 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim54Q9ERP3 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim54Q9ERP3 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim54Q9ERP3 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim54Q9ERP3 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
Trim54Q9ERP3 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim54Q9ERP3 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Trim54Q9ERP3 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Trim54Q9ERP3 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim54Q9ERP3 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Trim54Q9ERP3 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC16.57■□□□□ 0.24
Trim54Q9ERP3 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim54Q9ERP3 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC16.57■□□□□ 0.24
Trim54Q9ERP3 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC16.57■□□□□ 0.24
Trim54Q9ERP3 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC16.57■□□□□ 0.24
Trim54Q9ERP3 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC16.57■□□□□ 0.24
Trim54Q9ERP3 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
Trim54Q9ERP3 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC16.57■□□□□ 0.24
Trim54Q9ERP3 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC16.57■□□□□ 0.24
Trim54Q9ERP3 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Trim54Q9ERP3 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Trim54Q9ERP3 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim54Q9ERP3 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC16.57■□□□□ 0.24
Trim54Q9ERP3 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC16.57■□□□□ 0.24
Trim54Q9ERP3 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim54Q9ERP3 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim54Q9ERP3 Nrn1-204ENSMUST00000224323 1779 ntBASIC16.56■□□□□ 0.24
Trim54Q9ERP3 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Trim54Q9ERP3 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim54Q9ERP3 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim54Q9ERP3 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Trim54Q9ERP3 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim54Q9ERP3 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim54Q9ERP3 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim54Q9ERP3 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Trim54Q9ERP3 Gm13332-201ENSMUST00000120451 1398 ntBASIC16.56■□□□□ 0.24
Trim54Q9ERP3 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC16.56■□□□□ 0.24
Trim54Q9ERP3 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC16.56■□□□□ 0.24
Trim54Q9ERP3 Gm45612-201ENSMUST00000211320 160 ntBASIC16.56■□□□□ 0.24
Trim54Q9ERP3 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim54Q9ERP3 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Trim54Q9ERP3 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Trim54Q9ERP3 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC16.56■□□□□ 0.24
Trim54Q9ERP3 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim54Q9ERP3 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Trim54Q9ERP3 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim54Q9ERP3 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim54Q9ERP3 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim54Q9ERP3 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim54Q9ERP3 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Trim54Q9ERP3 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim54Q9ERP3 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Trim54Q9ERP3 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim54Q9ERP3 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim54Q9ERP3 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim54Q9ERP3 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim54Q9ERP3 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Trim54Q9ERP3 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim54Q9ERP3 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim54Q9ERP3 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 38.9 ms