Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Cpsf1Q9EPU4 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC21.01■□□□□ 0.95
Cpsf1Q9EPU4 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Cpsf1Q9EPU4 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
Cpsf1Q9EPU4 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Cpsf1Q9EPU4 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cpsf1Q9EPU4 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cpsf1Q9EPU4 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC21.01■□□□□ 0.95
Cpsf1Q9EPU4 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Cpsf1Q9EPU4 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC21.01■□□□□ 0.95
Cpsf1Q9EPU4 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Cpsf1Q9EPU4 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cpsf1Q9EPU4 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Cpsf1Q9EPU4 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Cpsf1Q9EPU4 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cpsf1Q9EPU4 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cpsf1Q9EPU4 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Cpsf1Q9EPU4 Gm13034-201ENSMUST00000121342 3177 ntBASIC21■□□□□ 0.95
Cpsf1Q9EPU4 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cpsf1Q9EPU4 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Cpsf1Q9EPU4 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cpsf1Q9EPU4 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC21■□□□□ 0.95
Cpsf1Q9EPU4 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Cpsf1Q9EPU4 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC21■□□□□ 0.95
Cpsf1Q9EPU4 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cpsf1Q9EPU4 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC21■□□□□ 0.95
Cpsf1Q9EPU4 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cpsf1Q9EPU4 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
Cpsf1Q9EPU4 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC21■□□□□ 0.95
Cpsf1Q9EPU4 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC21■□□□□ 0.95
Cpsf1Q9EPU4 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC21■□□□□ 0.95
Cpsf1Q9EPU4 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cpsf1Q9EPU4 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
Cpsf1Q9EPU4 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
Cpsf1Q9EPU4 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Cpsf1Q9EPU4 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cpsf1Q9EPU4 Gm8096-201ENSMUST00000209921 1591 ntBASIC21■□□□□ 0.95
Cpsf1Q9EPU4 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
Cpsf1Q9EPU4 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cpsf1Q9EPU4 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC21■□□□□ 0.95
Cpsf1Q9EPU4 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC21■□□□□ 0.95
Cpsf1Q9EPU4 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
Cpsf1Q9EPU4 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cpsf1Q9EPU4 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC20.99■□□□□ 0.95
Cpsf1Q9EPU4 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Cpsf1Q9EPU4 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC20.99■□□□□ 0.95
Cpsf1Q9EPU4 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC20.99■□□□□ 0.95
Cpsf1Q9EPU4 Gm2810-201ENSMUST00000118681 990 ntBASIC20.99■□□□□ 0.95
Cpsf1Q9EPU4 Gm15483-201ENSMUST00000120338 456 ntBASIC20.99■□□□□ 0.95
Cpsf1Q9EPU4 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC20.99■□□□□ 0.95
Cpsf1Q9EPU4 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC20.99■□□□□ 0.95
Cpsf1Q9EPU4 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cpsf1Q9EPU4 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cpsf1Q9EPU4 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC20.99■□□□□ 0.95
Cpsf1Q9EPU4 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC20.99■□□□□ 0.95
Cpsf1Q9EPU4 AC139382.1-201ENSMUST00000221402 498 ntBASIC20.99■□□□□ 0.95
Cpsf1Q9EPU4 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC20.99■□□□□ 0.95
Cpsf1Q9EPU4 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cpsf1Q9EPU4 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cpsf1Q9EPU4 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC20.99■□□□□ 0.95
Cpsf1Q9EPU4 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Cpsf1Q9EPU4 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cpsf1Q9EPU4 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cpsf1Q9EPU4 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cpsf1Q9EPU4 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cpsf1Q9EPU4 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Cpsf1Q9EPU4 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cpsf1Q9EPU4 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cpsf1Q9EPU4 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cpsf1Q9EPU4 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cpsf1Q9EPU4 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC20.98■□□□□ 0.95
Cpsf1Q9EPU4 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Cpsf1Q9EPU4 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cpsf1Q9EPU4 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
Cpsf1Q9EPU4 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Cpsf1Q9EPU4 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC20.98■□□□□ 0.95
Cpsf1Q9EPU4 AC140397.2-201ENSMUST00000224213 834 ntBASIC20.98■□□□□ 0.95
Cpsf1Q9EPU4 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Cpsf1Q9EPU4 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cpsf1Q9EPU4 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cpsf1Q9EPU4 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Cpsf1Q9EPU4 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cpsf1Q9EPU4 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
Cpsf1Q9EPU4 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC20.98■□□□□ 0.95
Cpsf1Q9EPU4 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cpsf1Q9EPU4 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cpsf1Q9EPU4 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cpsf1Q9EPU4 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cpsf1Q9EPU4 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cpsf1Q9EPU4 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC20.97■□□□□ 0.95
Cpsf1Q9EPU4 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC20.97■□□□□ 0.95
Cpsf1Q9EPU4 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC20.97■□□□□ 0.95
Cpsf1Q9EPU4 Gm25948-201ENSMUST00000175334 112 ntBASIC20.97■□□□□ 0.95
Cpsf1Q9EPU4 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC20.97■□□□□ 0.95
Cpsf1Q9EPU4 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cpsf1Q9EPU4 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cpsf1Q9EPU4 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cpsf1Q9EPU4 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Cpsf1Q9EPU4 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cpsf1Q9EPU4 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms