Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdc40Q9DC48 Gm5837-201ENSMUST00000191844 1369 ntBASIC14.26□□□□□ -0.13
Cdc40Q9DC48 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdc40Q9DC48 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdc40Q9DC48 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Cdc40Q9DC48 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
Cdc40Q9DC48 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC14.26□□□□□ -0.13
Cdc40Q9DC48 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC14.26□□□□□ -0.13
Cdc40Q9DC48 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdc40Q9DC48 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC14.26□□□□□ -0.13
Cdc40Q9DC48 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdc40Q9DC48 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC14.26□□□□□ -0.13
Cdc40Q9DC48 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdc40Q9DC48 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdc40Q9DC48 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdc40Q9DC48 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdc40Q9DC48 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Cdc40Q9DC48 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdc40Q9DC48 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Cdc40Q9DC48 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdc40Q9DC48 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdc40Q9DC48 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC14.25□□□□□ -0.13
Cdc40Q9DC48 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdc40Q9DC48 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Cdc40Q9DC48 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdc40Q9DC48 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC14.25□□□□□ -0.13
Cdc40Q9DC48 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdc40Q9DC48 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdc40Q9DC48 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Cdc40Q9DC48 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Cdc40Q9DC48 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdc40Q9DC48 Gm6184-201ENSMUST00000120403 1261 ntBASIC14.25□□□□□ -0.13
Cdc40Q9DC48 Gm11780-201ENSMUST00000136880 516 ntBASIC14.25□□□□□ -0.13
Cdc40Q9DC48 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC14.25□□□□□ -0.13
Cdc40Q9DC48 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdc40Q9DC48 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC14.25□□□□□ -0.13
Cdc40Q9DC48 AC127302.2-201ENSMUST00000215212 268 ntBASIC14.25□□□□□ -0.13
Cdc40Q9DC48 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC14.25□□□□□ -0.13
Cdc40Q9DC48 AV026068-213ENSMUST00000223675 1171 ntBASIC14.25□□□□□ -0.13
Cdc40Q9DC48 AC159093.1-201ENSMUST00000227779 380 ntBASIC14.25□□□□□ -0.13
Cdc40Q9DC48 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdc40Q9DC48 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Cdc40Q9DC48 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdc40Q9DC48 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Cdc40Q9DC48 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdc40Q9DC48 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdc40Q9DC48 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdc40Q9DC48 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdc40Q9DC48 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdc40Q9DC48 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdc40Q9DC48 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdc40Q9DC48 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Cdc40Q9DC48 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdc40Q9DC48 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cdc40Q9DC48 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdc40Q9DC48 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdc40Q9DC48 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdc40Q9DC48 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdc40Q9DC48 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdc40Q9DC48 Prob1-201ENSMUST00000097619 3021 ntBASIC14.24□□□□□ -0.13
Cdc40Q9DC48 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdc40Q9DC48 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdc40Q9DC48 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC14.24□□□□□ -0.13
Cdc40Q9DC48 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC14.24□□□□□ -0.13
Cdc40Q9DC48 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC14.24□□□□□ -0.13
Cdc40Q9DC48 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Cdc40Q9DC48 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC14.24□□□□□ -0.13
Cdc40Q9DC48 Gm43073-201ENSMUST00000198200 1189 ntBASIC14.24□□□□□ -0.13
Cdc40Q9DC48 Gm43332-201ENSMUST00000202511 1044 ntBASIC14.24□□□□□ -0.13
Cdc40Q9DC48 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC14.24□□□□□ -0.13
Cdc40Q9DC48 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdc40Q9DC48 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdc40Q9DC48 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdc40Q9DC48 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Cdc40Q9DC48 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdc40Q9DC48 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC14.24□□□□□ -0.13
Cdc40Q9DC48 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdc40Q9DC48 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC14.24□□□□□ -0.13
Cdc40Q9DC48 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdc40Q9DC48 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdc40Q9DC48 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Cdc40Q9DC48 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdc40Q9DC48 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC14.24□□□□□ -0.13
Cdc40Q9DC48 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
Cdc40Q9DC48 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdc40Q9DC48 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cdc40Q9DC48 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cdc40Q9DC48 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cdc40Q9DC48 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Cdc40Q9DC48 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Cdc40Q9DC48 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Cdc40Q9DC48 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cdc40Q9DC48 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Cdc40Q9DC48 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC14.23□□□□□ -0.13
Cdc40Q9DC48 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Cdc40Q9DC48 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cdc40Q9DC48 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Cdc40Q9DC48 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cdc40Q9DC48 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Cdc40Q9DC48 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 38.3 ms