Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ccdc9Q8VC31 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Ccdc9Q8VC31 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ccdc9Q8VC31 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.56
Ccdc9Q8VC31 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Ccdc9Q8VC31 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ccdc9Q8VC31 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Ccdc9Q8VC31 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
Ccdc9Q8VC31 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Ccdc9Q8VC31 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Ccdc9Q8VC31 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ccdc9Q8VC31 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ccdc9Q8VC31 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Ccdc9Q8VC31 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
Ccdc9Q8VC31 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ccdc9Q8VC31 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ccdc9Q8VC31 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Ccdc9Q8VC31 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
Ccdc9Q8VC31 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Ccdc9Q8VC31 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Ccdc9Q8VC31 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Ccdc9Q8VC31 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC18.52■□□□□ 0.55
Ccdc9Q8VC31 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Ccdc9Q8VC31 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Ccdc9Q8VC31 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc9Q8VC31 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
Ccdc9Q8VC31 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc9Q8VC31 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc9Q8VC31 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc9Q8VC31 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc9Q8VC31 Gm42769-201ENSMUST00000198576 1659 ntBASIC18.51■□□□□ 0.55
Ccdc9Q8VC31 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc9Q8VC31 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc9Q8VC31 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc9Q8VC31 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Ccdc9Q8VC31 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
Ccdc9Q8VC31 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Ccdc9Q8VC31 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc9Q8VC31 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc9Q8VC31 Gm6198-201ENSMUST00000191337 2929 ntBASIC18.51■□□□□ 0.55
Ccdc9Q8VC31 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc9Q8VC31 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC18.51■□□□□ 0.55
Ccdc9Q8VC31 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc9Q8VC31 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc9Q8VC31 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc9Q8VC31 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc9Q8VC31 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc9Q8VC31 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ccdc9Q8VC31 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC18.5■□□□□ 0.55
Ccdc9Q8VC31 Gm13003-201ENSMUST00000151040 2904 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc9Q8VC31 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc9Q8VC31 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc9Q8VC31 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc9Q8VC31 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc9Q8VC31 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc9Q8VC31 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
Ccdc9Q8VC31 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC18.5■□□□□ 0.55
Ccdc9Q8VC31 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC18.5■□□□□ 0.55
Ccdc9Q8VC31 Gm20760-201ENSMUST00000179197 648 ntBASIC18.5■□□□□ 0.55
Ccdc9Q8VC31 AC135637.1-201ENSMUST00000227750 365 ntBASIC18.5■□□□□ 0.55
Ccdc9Q8VC31 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc9Q8VC31 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc9Q8VC31 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc9Q8VC31 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Ccdc9Q8VC31 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Ccdc9Q8VC31 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc9Q8VC31 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ccdc9Q8VC31 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc9Q8VC31 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc9Q8VC31 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
Ccdc9Q8VC31 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc9Q8VC31 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc9Q8VC31 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc9Q8VC31 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc9Q8VC31 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC18.49■□□□□ 0.55
Ccdc9Q8VC31 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc9Q8VC31 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc9Q8VC31 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC18.49■□□□□ 0.55
Ccdc9Q8VC31 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc9Q8VC31 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc9Q8VC31 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc9Q8VC31 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Ccdc9Q8VC31 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC18.49■□□□□ 0.55
Ccdc9Q8VC31 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc9Q8VC31 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc9Q8VC31 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC18.49■□□□□ 0.55
Ccdc9Q8VC31 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc9Q8VC31 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc9Q8VC31 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc9Q8VC31 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC18.49■□□□□ 0.55
Ccdc9Q8VC31 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Ccdc9Q8VC31 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
Ccdc9Q8VC31 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc9Q8VC31 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc9Q8VC31 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc9Q8VC31 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc9Q8VC31 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc9Q8VC31 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc9Q8VC31 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Ccdc9Q8VC31 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 58.7 ms