Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ushbp1Q8R370 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ushbp1Q8R370 AC131586.3-201ENSMUST00000228355 1367 ntBASIC17.2■□□□□ 0.34
Ushbp1Q8R370 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ushbp1Q8R370 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ushbp1Q8R370 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC17.2■□□□□ 0.34
Ushbp1Q8R370 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC17.2■□□□□ 0.34
Ushbp1Q8R370 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC17.2■□□□□ 0.34
Ushbp1Q8R370 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ushbp1Q8R370 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ushbp1Q8R370 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ushbp1Q8R370 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ushbp1Q8R370 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Ushbp1Q8R370 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ushbp1Q8R370 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Ushbp1Q8R370 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ushbp1Q8R370 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ushbp1Q8R370 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Ushbp1Q8R370 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ushbp1Q8R370 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ushbp1Q8R370 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC17.19■□□□□ 0.34
Ushbp1Q8R370 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ushbp1Q8R370 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ushbp1Q8R370 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ushbp1Q8R370 Gm5837-201ENSMUST00000191844 1369 ntBASIC17.19■□□□□ 0.34
Ushbp1Q8R370 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ushbp1Q8R370 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
Ushbp1Q8R370 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ushbp1Q8R370 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ushbp1Q8R370 Gm8344-201ENSMUST00000119813 856 ntBASIC17.19■□□□□ 0.34
Ushbp1Q8R370 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC17.19■□□□□ 0.34
Ushbp1Q8R370 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC17.19■□□□□ 0.34
Ushbp1Q8R370 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
Ushbp1Q8R370 AC090659.1-201ENSMUST00000224334 768 ntBASIC17.19■□□□□ 0.34
Ushbp1Q8R370 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC17.19■□□□□ 0.34
Ushbp1Q8R370 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ushbp1Q8R370 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ushbp1Q8R370 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Ushbp1Q8R370 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ushbp1Q8R370 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ushbp1Q8R370 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ushbp1Q8R370 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ushbp1Q8R370 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Ushbp1Q8R370 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC17.19■□□□□ 0.34
Ushbp1Q8R370 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC17.18■□□□□ 0.34
Ushbp1Q8R370 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Ushbp1Q8R370 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ushbp1Q8R370 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ushbp1Q8R370 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ushbp1Q8R370 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Ushbp1Q8R370 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Ushbp1Q8R370 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ushbp1Q8R370 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ushbp1Q8R370 Gm9727-201ENSMUST00000161387 555 ntBASIC17.18■□□□□ 0.34
Ushbp1Q8R370 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
Ushbp1Q8R370 Gm27628-201ENSMUST00000184911 107 ntBASIC17.18■□□□□ 0.34
Ushbp1Q8R370 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ushbp1Q8R370 AC160980.1-201ENSMUST00000224136 970 ntBASIC17.18■□□□□ 0.34
Ushbp1Q8R370 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Ushbp1Q8R370 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ushbp1Q8R370 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Ushbp1Q8R370 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ushbp1Q8R370 Gm9867-201ENSMUST00000192212 2647 ntBASIC17.18■□□□□ 0.34
Ushbp1Q8R370 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ushbp1Q8R370 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ushbp1Q8R370 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ushbp1Q8R370 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Ushbp1Q8R370 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ushbp1Q8R370 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ushbp1Q8R370 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ushbp1Q8R370 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
Ushbp1Q8R370 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Ushbp1Q8R370 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ushbp1Q8R370 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC17.17■□□□□ 0.34
Ushbp1Q8R370 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ushbp1Q8R370 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Ushbp1Q8R370 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ushbp1Q8R370 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Ushbp1Q8R370 Gm8097-201ENSMUST00000117903 829 ntBASIC17.17■□□□□ 0.34
Ushbp1Q8R370 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC17.17■□□□□ 0.34
Ushbp1Q8R370 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Ushbp1Q8R370 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC17.17■□□□□ 0.34
Ushbp1Q8R370 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC17.17■□□□□ 0.34
Ushbp1Q8R370 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC17.17■□□□□ 0.34
Ushbp1Q8R370 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC17.17■□□□□ 0.34
Ushbp1Q8R370 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ushbp1Q8R370 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC17.17■□□□□ 0.34
Ushbp1Q8R370 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Ushbp1Q8R370 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ushbp1Q8R370 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ushbp1Q8R370 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ushbp1Q8R370 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Ushbp1Q8R370 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Ushbp1Q8R370 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Ushbp1Q8R370 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ushbp1Q8R370 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ushbp1Q8R370 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ushbp1Q8R370 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC17.16■□□□□ 0.34
Ushbp1Q8R370 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC17.16■□□□□ 0.34
Ushbp1Q8R370 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms