Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim9Q8C7M3 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Trim9Q8C7M3 Gm7222-201ENSMUST00000117512 906 ntBASIC16.92■□□□□ 0.3
Trim9Q8C7M3 Gm11452-201ENSMUST00000122376 690 ntBASIC16.92■□□□□ 0.3
Trim9Q8C7M3 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Trim9Q8C7M3 Gm18489-201ENSMUST00000172565 551 ntBASIC16.92■□□□□ 0.3
Trim9Q8C7M3 Gm37153-201ENSMUST00000193637 231 ntBASIC16.92■□□□□ 0.3
Trim9Q8C7M3 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim9Q8C7M3 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim9Q8C7M3 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim9Q8C7M3 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
Trim9Q8C7M3 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
Trim9Q8C7M3 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim9Q8C7M3 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC16.92■□□□□ 0.3
Trim9Q8C7M3 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim9Q8C7M3 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Trim9Q8C7M3 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim9Q8C7M3 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Trim9Q8C7M3 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Trim9Q8C7M3 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Trim9Q8C7M3 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim9Q8C7M3 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim9Q8C7M3 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim9Q8C7M3 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC16.91■□□□□ 0.3
Trim9Q8C7M3 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim9Q8C7M3 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim9Q8C7M3 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Trim9Q8C7M3 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim9Q8C7M3 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim9Q8C7M3 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Trim9Q8C7M3 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
Trim9Q8C7M3 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC16.91■□□□□ 0.3
Trim9Q8C7M3 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim9Q8C7M3 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC16.91■□□□□ 0.3
Trim9Q8C7M3 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC16.91■□□□□ 0.3
Trim9Q8C7M3 CT009510.1-201ENSMUST00000227972 270 ntBASIC16.91■□□□□ 0.3
Trim9Q8C7M3 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim9Q8C7M3 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim9Q8C7M3 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim9Q8C7M3 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.3
Trim9Q8C7M3 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC16.91■□□□□ 0.3
Trim9Q8C7M3 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC16.91■□□□□ 0.3
Trim9Q8C7M3 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim9Q8C7M3 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Trim9Q8C7M3 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim9Q8C7M3 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim9Q8C7M3 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim9Q8C7M3 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Trim9Q8C7M3 AC174678.1-201ENSMUST00000228007 2749 ntBASIC16.9■□□□□ 0.3
Trim9Q8C7M3 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim9Q8C7M3 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim9Q8C7M3 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim9Q8C7M3 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim9Q8C7M3 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Trim9Q8C7M3 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim9Q8C7M3 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim9Q8C7M3 Gm15173-201ENSMUST00000122049 433 ntBASIC16.9■□□□□ 0.3
Trim9Q8C7M3 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Trim9Q8C7M3 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim9Q8C7M3 Mir8098-201ENSMUST00000184011 137 ntBASIC16.9■□□□□ 0.3
Trim9Q8C7M3 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim9Q8C7M3 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC16.9■□□□□ 0.3
Trim9Q8C7M3 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim9Q8C7M3 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim9Q8C7M3 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Trim9Q8C7M3 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Trim9Q8C7M3 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim9Q8C7M3 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim9Q8C7M3 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Trim9Q8C7M3 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim9Q8C7M3 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
Trim9Q8C7M3 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Trim9Q8C7M3 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim9Q8C7M3 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim9Q8C7M3 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC16.89■□□□□ 0.29
Trim9Q8C7M3 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Trim9Q8C7M3 Gm11453-201ENSMUST00000117318 1007 ntBASIC16.89■□□□□ 0.29
Trim9Q8C7M3 Gm13884-201ENSMUST00000118103 829 ntBASIC16.89■□□□□ 0.29
Trim9Q8C7M3 Gm10499-201ENSMUST00000174094 934 ntBASIC16.89■□□□□ 0.29
Trim9Q8C7M3 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC16.89■□□□□ 0.29
Trim9Q8C7M3 Gm5253-201ENSMUST00000187104 1025 ntBASIC16.89■□□□□ 0.29
Trim9Q8C7M3 Gm6550-201ENSMUST00000187574 993 ntBASIC16.89■□□□□ 0.29
Trim9Q8C7M3 Gm9682-201ENSMUST00000197505 556 ntBASIC16.89■□□□□ 0.29
Trim9Q8C7M3 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Trim9Q8C7M3 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Trim9Q8C7M3 Gm5864-201ENSMUST00000202263 970 ntBASIC16.89■□□□□ 0.29
Trim9Q8C7M3 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
Trim9Q8C7M3 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC16.89■□□□□ 0.29
Trim9Q8C7M3 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC16.89■□□□□ 0.29
Trim9Q8C7M3 AC161829.1-201ENSMUST00000220298 281 ntBASIC16.89■□□□□ 0.29
Trim9Q8C7M3 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim9Q8C7M3 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Trim9Q8C7M3 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim9Q8C7M3 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim9Q8C7M3 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim9Q8C7M3 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trim9Q8C7M3 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trim9Q8C7M3 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trim9Q8C7M3 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trim9Q8C7M3 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms