Protein–RNA interactions for Protein: Q8BZT2

Sh3rf2, Putative E3 ubiquitin-protein ligase SH3RF2, mousemouse

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf2Q8BZT2 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Sh3rf2Q8BZT2 AC025913.2-201ENSMUST00000220136 1766 ntBASIC15.53■□□□□ 0.08
Sh3rf2Q8BZT2 Nrn1-204ENSMUST00000224323 1779 ntBASIC15.53■□□□□ 0.08
Sh3rf2Q8BZT2 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Sh3rf2Q8BZT2 AC154231.1-201ENSMUST00000220564 2175 ntBASIC15.53■□□□□ 0.08
Sh3rf2Q8BZT2 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Sh3rf2Q8BZT2 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC15.53■□□□□ 0.08
Sh3rf2Q8BZT2 Gm19430-201ENSMUST00000193847 2137 ntBASIC15.53■□□□□ 0.08
Sh3rf2Q8BZT2 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC15.53■□□□□ 0.08
Sh3rf2Q8BZT2 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Sh3rf2Q8BZT2 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Sh3rf2Q8BZT2 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Sh3rf2Q8BZT2 Zkscan3-208ENSMUST00000224820 5398 ntBASIC15.53■□□□□ 0.08
Sh3rf2Q8BZT2 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Sh3rf2Q8BZT2 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Sh3rf2Q8BZT2 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Sh3rf2Q8BZT2 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Sh3rf2Q8BZT2 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Sh3rf2Q8BZT2 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
Sh3rf2Q8BZT2 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Sh3rf2Q8BZT2 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.08
Sh3rf2Q8BZT2 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Sh3rf2Q8BZT2 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC15.52■□□□□ 0.08
Sh3rf2Q8BZT2 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
Sh3rf2Q8BZT2 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Sh3rf2Q8BZT2 AC130669.1-201ENSMUST00000228537 1672 ntBASIC15.52■□□□□ 0.08
Sh3rf2Q8BZT2 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Sh3rf2Q8BZT2 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC15.52■□□□□ 0.08
Sh3rf2Q8BZT2 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
Sh3rf2Q8BZT2 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Sh3rf2Q8BZT2 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Sh3rf2Q8BZT2 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Sh3rf2Q8BZT2 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Sh3rf2Q8BZT2 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Sh3rf2Q8BZT2 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
Sh3rf2Q8BZT2 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Sh3rf2Q8BZT2 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Sh3rf2Q8BZT2 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Sh3rf2Q8BZT2 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Sh3rf2Q8BZT2 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Sh3rf2Q8BZT2 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
Sh3rf2Q8BZT2 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Sh3rf2Q8BZT2 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Sh3rf2Q8BZT2 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
Sh3rf2Q8BZT2 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
Sh3rf2Q8BZT2 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Sh3rf2Q8BZT2 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Sh3rf2Q8BZT2 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Sh3rf2Q8BZT2 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Sh3rf2Q8BZT2 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Sh3rf2Q8BZT2 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Sh3rf2Q8BZT2 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Sh3rf2Q8BZT2 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Sh3rf2Q8BZT2 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
Sh3rf2Q8BZT2 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC15.51■□□□□ 0.07
Sh3rf2Q8BZT2 Gm9385-201ENSMUST00000117563 472 ntBASIC15.51■□□□□ 0.07
Sh3rf2Q8BZT2 Gm16198-201ENSMUST00000118766 670 ntBASIC15.51■□□□□ 0.07
Sh3rf2Q8BZT2 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC15.51■□□□□ 0.07
Sh3rf2Q8BZT2 AC154621.1-201ENSMUST00000226155 1119 ntBASIC15.51■□□□□ 0.07
Sh3rf2Q8BZT2 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Sh3rf2Q8BZT2 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Sh3rf2Q8BZT2 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Sh3rf2Q8BZT2 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Sh3rf2Q8BZT2 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC15.51■□□□□ 0.07
Sh3rf2Q8BZT2 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Sh3rf2Q8BZT2 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Sh3rf2Q8BZT2 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Sh3rf2Q8BZT2 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
Sh3rf2Q8BZT2 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Sh3rf2Q8BZT2 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Sh3rf2Q8BZT2 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Sh3rf2Q8BZT2 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Sh3rf2Q8BZT2 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Sh3rf2Q8BZT2 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Sh3rf2Q8BZT2 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Sh3rf2Q8BZT2 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Sh3rf2Q8BZT2 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Sh3rf2Q8BZT2 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Sh3rf2Q8BZT2 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Sh3rf2Q8BZT2 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Sh3rf2Q8BZT2 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Sh3rf2Q8BZT2 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
Sh3rf2Q8BZT2 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Sh3rf2Q8BZT2 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Sh3rf2Q8BZT2 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Sh3rf2Q8BZT2 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Sh3rf2Q8BZT2 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC15.5■□□□□ 0.07
Sh3rf2Q8BZT2 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Sh3rf2Q8BZT2 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Sh3rf2Q8BZT2 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Sh3rf2Q8BZT2 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Sh3rf2Q8BZT2 Gm13410-201ENSMUST00000117058 1415 ntBASIC15.5■□□□□ 0.07
Sh3rf2Q8BZT2 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Sh3rf2Q8BZT2 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC15.5■□□□□ 0.07
Sh3rf2Q8BZT2 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Sh3rf2Q8BZT2 Gm13332-201ENSMUST00000120451 1398 ntBASIC15.49■□□□□ 0.07
Sh3rf2Q8BZT2 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Sh3rf2Q8BZT2 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Sh3rf2Q8BZT2 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Sh3rf2Q8BZT2 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms