Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Rnf220Q6PDX6 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC14.59□□□□□ -0.07
Rnf220Q6PDX6 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
Rnf220Q6PDX6 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.07
Rnf220Q6PDX6 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Rnf220Q6PDX6 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Rnf220Q6PDX6 Gm43205-201ENSMUST00000198622 1968 ntBASIC14.58□□□□□ -0.07
Rnf220Q6PDX6 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
Rnf220Q6PDX6 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Rnf220Q6PDX6 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Rnf220Q6PDX6 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Rnf220Q6PDX6 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Rnf220Q6PDX6 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Rnf220Q6PDX6 Gm13186-201ENSMUST00000118031 316 ntBASIC14.58□□□□□ -0.08
Rnf220Q6PDX6 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC14.58□□□□□ -0.08
Rnf220Q6PDX6 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC14.58□□□□□ -0.08
Rnf220Q6PDX6 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Rnf220Q6PDX6 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Rnf220Q6PDX6 Fbxl12-205ENSMUST00000140702 1555 ntBASIC14.58□□□□□ -0.08
Rnf220Q6PDX6 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Rnf220Q6PDX6 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Rnf220Q6PDX6 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Rnf220Q6PDX6 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC14.58□□□□□ -0.08
Rnf220Q6PDX6 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Rnf220Q6PDX6 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Rnf220Q6PDX6 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Rnf220Q6PDX6 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC14.58□□□□□ -0.08
Rnf220Q6PDX6 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Rnf220Q6PDX6 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC14.58□□□□□ -0.08
Rnf220Q6PDX6 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Rnf220Q6PDX6 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC14.58□□□□□ -0.08
Rnf220Q6PDX6 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Rnf220Q6PDX6 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Rnf220Q6PDX6 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Rnf220Q6PDX6 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
Rnf220Q6PDX6 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Rnf220Q6PDX6 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Rnf220Q6PDX6 Gfra2-202ENSMUST00000227633 1480 ntBASIC14.57□□□□□ -0.08
Rnf220Q6PDX6 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Rnf220Q6PDX6 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Rnf220Q6PDX6 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC14.57□□□□□ -0.08
Rnf220Q6PDX6 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Rnf220Q6PDX6 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Rnf220Q6PDX6 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Rnf220Q6PDX6 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Rnf220Q6PDX6 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Rnf220Q6PDX6 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Rnf220Q6PDX6 Gm43353-201ENSMUST00000199224 1295 ntBASIC14.57□□□□□ -0.08
Rnf220Q6PDX6 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Rnf220Q6PDX6 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Rnf220Q6PDX6 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Rnf220Q6PDX6 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Rnf220Q6PDX6 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Rnf220Q6PDX6 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Rnf220Q6PDX6 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Rnf220Q6PDX6 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Rnf220Q6PDX6 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Rnf220Q6PDX6 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Rnf220Q6PDX6 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
Rnf220Q6PDX6 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Rnf220Q6PDX6 Gm43509-201ENSMUST00000196551 2594 ntBASIC14.57□□□□□ -0.08
Rnf220Q6PDX6 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Rnf220Q6PDX6 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Rnf220Q6PDX6 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC14.56□□□□□ -0.08
Rnf220Q6PDX6 Camk2g-217ENSMUST00000226630 1937 ntBASIC14.56□□□□□ -0.08
Rnf220Q6PDX6 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Rnf220Q6PDX6 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Rnf220Q6PDX6 Actl10-202ENSMUST00000226583 1501 ntBASIC14.56□□□□□ -0.08
Rnf220Q6PDX6 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Rnf220Q6PDX6 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Rnf220Q6PDX6 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Rnf220Q6PDX6 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Rnf220Q6PDX6 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Rnf220Q6PDX6 Gm43364-201ENSMUST00000196046 3274 ntBASIC14.56□□□□□ -0.08
Rnf220Q6PDX6 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC14.56□□□□□ -0.08
Rnf220Q6PDX6 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC14.56□□□□□ -0.08
Rnf220Q6PDX6 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC14.56□□□□□ -0.08
Rnf220Q6PDX6 Arhgef33-211ENSMUST00000225658 473 ntBASIC14.56□□□□□ -0.08
Rnf220Q6PDX6 Gm10812-201ENSMUST00000099864 546 ntBASIC14.56□□□□□ -0.08
Rnf220Q6PDX6 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Rnf220Q6PDX6 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC14.56□□□□□ -0.08
Rnf220Q6PDX6 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Rnf220Q6PDX6 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Rnf220Q6PDX6 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Rnf220Q6PDX6 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Rnf220Q6PDX6 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Rnf220Q6PDX6 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Rnf220Q6PDX6 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Rnf220Q6PDX6 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Rnf220Q6PDX6 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Rnf220Q6PDX6 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC14.55□□□□□ -0.08
Rnf220Q6PDX6 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Rnf220Q6PDX6 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Rnf220Q6PDX6 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Rnf220Q6PDX6 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Rnf220Q6PDX6 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Rnf220Q6PDX6 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Rnf220Q6PDX6 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Rnf220Q6PDX6 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Rnf220Q6PDX6 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms