Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
ShhQ62226 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ShhQ62226 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ShhQ62226 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC14.32□□□□□ -0.12
ShhQ62226 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
ShhQ62226 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
ShhQ62226 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
ShhQ62226 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ShhQ62226 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ShhQ62226 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ShhQ62226 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ShhQ62226 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ShhQ62226 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ShhQ62226 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ShhQ62226 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ShhQ62226 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
ShhQ62226 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ShhQ62226 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
ShhQ62226 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ShhQ62226 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC14.31□□□□□ -0.12
ShhQ62226 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC14.31□□□□□ -0.12
ShhQ62226 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC14.31□□□□□ -0.12
ShhQ62226 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
ShhQ62226 Gm27321-201ENSMUST00000185021 205 ntBASIC14.31□□□□□ -0.12
ShhQ62226 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC14.31□□□□□ -0.12
ShhQ62226 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
ShhQ62226 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC14.31□□□□□ -0.12
ShhQ62226 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
ShhQ62226 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ShhQ62226 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
ShhQ62226 Gm38327-201ENSMUST00000195852 1755 ntBASIC14.31□□□□□ -0.12
ShhQ62226 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
ShhQ62226 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
ShhQ62226 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ShhQ62226 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ShhQ62226 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
ShhQ62226 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
ShhQ62226 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ShhQ62226 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ShhQ62226 Ptprs-211ENSMUST00000223859 5588 ntBASIC14.31□□□□□ -0.12
ShhQ62226 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
ShhQ62226 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC14.3□□□□□ -0.12
ShhQ62226 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ShhQ62226 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ShhQ62226 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
ShhQ62226 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ShhQ62226 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ShhQ62226 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ShhQ62226 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
ShhQ62226 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ShhQ62226 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
ShhQ62226 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
ShhQ62226 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ShhQ62226 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC14.3□□□□□ -0.12
ShhQ62226 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
ShhQ62226 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC14.3□□□□□ -0.12
ShhQ62226 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC14.3□□□□□ -0.12
ShhQ62226 Gm15500-202ENSMUST00000071641 1019 ntBASIC14.3□□□□□ -0.12
ShhQ62226 Gm13127-201ENSMUST00000118978 1389 ntBASIC14.3□□□□□ -0.12
ShhQ62226 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ShhQ62226 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
ShhQ62226 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
ShhQ62226 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ShhQ62226 AC157650.3-201ENSMUST00000225058 1476 ntBASIC14.3□□□□□ -0.12
ShhQ62226 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC14.3□□□□□ -0.12
ShhQ62226 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
ShhQ62226 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ShhQ62226 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
ShhQ62226 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ShhQ62226 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ShhQ62226 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ShhQ62226 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC14.29□□□□□ -0.12
ShhQ62226 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ShhQ62226 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
ShhQ62226 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
ShhQ62226 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
ShhQ62226 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
ShhQ62226 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ShhQ62226 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
ShhQ62226 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
ShhQ62226 Gm12497-201ENSMUST00000138778 237 ntBASIC14.29□□□□□ -0.12
ShhQ62226 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
ShhQ62226 Mir6956-201ENSMUST00000183598 62 ntBASIC14.29□□□□□ -0.12
ShhQ62226 Mir6404-201ENSMUST00000183699 94 ntBASIC14.29□□□□□ -0.12
ShhQ62226 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
ShhQ62226 Gm8655-201ENSMUST00000221159 852 ntBASIC14.29□□□□□ -0.12
ShhQ62226 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
ShhQ62226 Wdyhv1-206ENSMUST00000227142 786 ntBASIC14.29□□□□□ -0.12
ShhQ62226 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC14.29□□□□□ -0.12
ShhQ62226 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
ShhQ62226 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
ShhQ62226 Gm3928-201ENSMUST00000121141 1307 ntBASIC14.29□□□□□ -0.12
ShhQ62226 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
ShhQ62226 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ShhQ62226 Grk6-207ENSMUST00000225925 2769 ntBASIC14.29□□□□□ -0.12
ShhQ62226 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ShhQ62226 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC14.29□□□□□ -0.12
ShhQ62226 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
ShhQ62226 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ShhQ62226 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 40.9 ms