Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Nr1h4Q60641 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Nr1h4Q60641 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Nr1h4Q60641 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Nr1h4Q60641 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Nr1h4Q60641 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Nr1h4Q60641 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Nr1h4Q60641 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Nr1h4Q60641 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Nr1h4Q60641 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Nr1h4Q60641 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Nr1h4Q60641 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Nr1h4Q60641 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Nr1h4Q60641 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Nr1h4Q60641 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Nr1h4Q60641 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Nr1h4Q60641 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Nr1h4Q60641 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC14.62□□□□□ -0.07
Nr1h4Q60641 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Nr1h4Q60641 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Nr1h4Q60641 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Nr1h4Q60641 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Nr1h4Q60641 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Nr1h4Q60641 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Nr1h4Q60641 Gm15565-201ENSMUST00000118890 427 ntBASIC14.62□□□□□ -0.07
Nr1h4Q60641 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Nr1h4Q60641 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC14.62□□□□□ -0.07
Nr1h4Q60641 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC14.62□□□□□ -0.07
Nr1h4Q60641 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Nr1h4Q60641 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC14.62□□□□□ -0.07
Nr1h4Q60641 AC153881.2-201ENSMUST00000214877 204 ntBASIC14.62□□□□□ -0.07
Nr1h4Q60641 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Nr1h4Q60641 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Nr1h4Q60641 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC14.62□□□□□ -0.07
Nr1h4Q60641 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Nr1h4Q60641 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC14.62□□□□□ -0.07
Nr1h4Q60641 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Nr1h4Q60641 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Nr1h4Q60641 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Nr1h4Q60641 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC14.62□□□□□ -0.07
Nr1h4Q60641 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Nr1h4Q60641 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Nr1h4Q60641 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Gm37912-201ENSMUST00000191895 3076 ntBASIC14.61□□□□□ -0.07
Nr1h4Q60641 Rubie-203ENSMUST00000227803 2430 ntBASIC14.61□□□□□ -0.07
Nr1h4Q60641 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Gm5587-201ENSMUST00000206270 674 ntBASIC14.61□□□□□ -0.07
Nr1h4Q60641 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC14.61□□□□□ -0.07
Nr1h4Q60641 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Nr1h4Q60641 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Nr1h4Q60641 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Nr1h4Q60641 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC14.6□□□□□ -0.07
Nr1h4Q60641 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
Nr1h4Q60641 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Nr1h4Q60641 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Nr1h4Q60641 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Nr1h4Q60641 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Nr1h4Q60641 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Nr1h4Q60641 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 32 ms