Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim40Q3UWA4 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim40Q3UWA4 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim40Q3UWA4 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Trim40Q3UWA4 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Trim40Q3UWA4 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC14.43□□□□□ -0.1
Trim40Q3UWA4 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Trim40Q3UWA4 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim40Q3UWA4 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim40Q3UWA4 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim40Q3UWA4 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim40Q3UWA4 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim40Q3UWA4 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC14.43□□□□□ -0.1
Trim40Q3UWA4 Gm6257-201ENSMUST00000163864 910 ntBASIC14.43□□□□□ -0.1
Trim40Q3UWA4 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim40Q3UWA4 Gm3272-201ENSMUST00000181181 1229 ntBASIC14.43□□□□□ -0.1
Trim40Q3UWA4 Gm27011-201ENSMUST00000182352 972 ntBASIC14.43□□□□□ -0.1
Trim40Q3UWA4 Mir1668-201ENSMUST00000184114 107 ntBASIC14.43□□□□□ -0.1
Trim40Q3UWA4 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC14.43□□□□□ -0.1
Trim40Q3UWA4 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim40Q3UWA4 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim40Q3UWA4 Gm10566-201ENSMUST00000086739 996 ntBASIC14.43□□□□□ -0.1
Trim40Q3UWA4 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim40Q3UWA4 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Trim40Q3UWA4 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Trim40Q3UWA4 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Trim40Q3UWA4 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Trim40Q3UWA4 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Trim40Q3UWA4 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Trim40Q3UWA4 Fbxl12-205ENSMUST00000140702 1555 ntBASIC14.43□□□□□ -0.1
Trim40Q3UWA4 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Trim40Q3UWA4 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim40Q3UWA4 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim40Q3UWA4 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim40Q3UWA4 AC167013.2-201ENSMUST00000228520 2684 ntBASIC14.42□□□□□ -0.1
Trim40Q3UWA4 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim40Q3UWA4 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC14.42□□□□□ -0.1
Trim40Q3UWA4 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim40Q3UWA4 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC14.42□□□□□ -0.1
Trim40Q3UWA4 Gm13436-201ENSMUST00000120418 567 ntBASIC14.42□□□□□ -0.1
Trim40Q3UWA4 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC14.42□□□□□ -0.1
Trim40Q3UWA4 Gm26039-201ENSMUST00000158152 144 ntBASIC14.42□□□□□ -0.1
Trim40Q3UWA4 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC14.42□□□□□ -0.1
Trim40Q3UWA4 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC14.42□□□□□ -0.1
Trim40Q3UWA4 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC14.42□□□□□ -0.1
Trim40Q3UWA4 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Trim40Q3UWA4 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim40Q3UWA4 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim40Q3UWA4 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC14.42□□□□□ -0.1
Trim40Q3UWA4 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim40Q3UWA4 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim40Q3UWA4 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim40Q3UWA4 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim40Q3UWA4 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim40Q3UWA4 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim40Q3UWA4 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC14.42□□□□□ -0.1
Trim40Q3UWA4 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Trim40Q3UWA4 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Trim40Q3UWA4 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
Trim40Q3UWA4 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC14.41□□□□□ -0.1
Trim40Q3UWA4 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Trim40Q3UWA4 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim40Q3UWA4 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim40Q3UWA4 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Trim40Q3UWA4 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Trim40Q3UWA4 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim40Q3UWA4 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim40Q3UWA4 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim40Q3UWA4 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Trim40Q3UWA4 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim40Q3UWA4 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Trim40Q3UWA4 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim40Q3UWA4 Mir5130-201ENSMUST00000175160 84 ntBASIC14.41□□□□□ -0.1
Trim40Q3UWA4 AL672049.1-201ENSMUST00000197943 91 ntBASIC14.41□□□□□ -0.1
Trim40Q3UWA4 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC14.41□□□□□ -0.1
Trim40Q3UWA4 AC148324.1-201ENSMUST00000219034 4240 ntBASIC14.41□□□□□ -0.1
Trim40Q3UWA4 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim40Q3UWA4 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Trim40Q3UWA4 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Trim40Q3UWA4 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim40Q3UWA4 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim40Q3UWA4 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim40Q3UWA4 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim40Q3UWA4 Gm10710-201ENSMUST00000047876 3971 ntBASIC14.41□□□□□ -0.1
Trim40Q3UWA4 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim40Q3UWA4 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim40Q3UWA4 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim40Q3UWA4 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim40Q3UWA4 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim40Q3UWA4 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Trim40Q3UWA4 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Trim40Q3UWA4 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim40Q3UWA4 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC14.4□□□□□ -0.1
Trim40Q3UWA4 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim40Q3UWA4 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC14.4□□□□□ -0.1
Trim40Q3UWA4 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim40Q3UWA4 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim40Q3UWA4 Gm20472-201ENSMUST00000174403 1240 ntBASIC14.4□□□□□ -0.1
Trim40Q3UWA4 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC14.4□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms