Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col28a1Q2UY11 Gm9889-202ENSMUST00000206983 1577 ntBASIC14.94□□□□□ -0.02
Col28a1Q2UY11 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col28a1Q2UY11 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
Col28a1Q2UY11 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col28a1Q2UY11 Gm6257-201ENSMUST00000163864 910 ntBASIC14.94□□□□□ -0.02
Col28a1Q2UY11 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC14.94□□□□□ -0.02
Col28a1Q2UY11 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col28a1Q2UY11 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col28a1Q2UY11 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col28a1Q2UY11 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col28a1Q2UY11 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col28a1Q2UY11 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col28a1Q2UY11 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col28a1Q2UY11 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col28a1Q2UY11 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
Col28a1Q2UY11 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col28a1Q2UY11 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col28a1Q2UY11 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC14.93□□□□□ -0.02
Col28a1Q2UY11 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col28a1Q2UY11 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col28a1Q2UY11 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col28a1Q2UY11 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col28a1Q2UY11 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col28a1Q2UY11 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Col28a1Q2UY11 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC14.93□□□□□ -0.02
Col28a1Q2UY11 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC14.93□□□□□ -0.02
Col28a1Q2UY11 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
Col28a1Q2UY11 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col28a1Q2UY11 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Col28a1Q2UY11 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col28a1Q2UY11 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col28a1Q2UY11 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC14.93□□□□□ -0.02
Col28a1Q2UY11 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC14.93□□□□□ -0.02
Col28a1Q2UY11 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC14.93□□□□□ -0.02
Col28a1Q2UY11 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col28a1Q2UY11 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 Gm45328-201ENSMUST00000210942 917 ntBASIC14.91□□□□□ -0.02
Col28a1Q2UY11 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC14.91□□□□□ -0.02
Col28a1Q2UY11 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC14.91□□□□□ -0.02
Col28a1Q2UY11 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col28a1Q2UY11 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 25.9 ms