Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Col6a1Q04857 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
Col6a1Q04857 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC16.95■□□□□ 0.3
Col6a1Q04857 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Col6a1Q04857 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC16.95■□□□□ 0.3
Col6a1Q04857 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Col6a1Q04857 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Col6a1Q04857 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col6a1Q04857 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Col6a1Q04857 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col6a1Q04857 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col6a1Q04857 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col6a1Q04857 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col6a1Q04857 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col6a1Q04857 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col6a1Q04857 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC16.95■□□□□ 0.3
Col6a1Q04857 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Col6a1Q04857 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col6a1Q04857 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col6a1Q04857 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
Col6a1Q04857 AC154767.3-201ENSMUST00000225150 1342 ntBASIC16.95■□□□□ 0.3
Col6a1Q04857 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Col6a1Q04857 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Col6a1Q04857 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col6a1Q04857 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col6a1Q04857 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC16.94■□□□□ 0.3
Col6a1Q04857 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Col6a1Q04857 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col6a1Q04857 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col6a1Q04857 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col6a1Q04857 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col6a1Q04857 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col6a1Q04857 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Col6a1Q04857 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC16.94■□□□□ 0.3
Col6a1Q04857 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC16.94■□□□□ 0.3
Col6a1Q04857 Gm7336-201ENSMUST00000107041 1232 ntBASIC16.94■□□□□ 0.3
Col6a1Q04857 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Col6a1Q04857 Rpph1-201ENSMUST00000175096 319 ntBASIC16.94■□□□□ 0.3
Col6a1Q04857 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Col6a1Q04857 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Col6a1Q04857 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col6a1Q04857 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col6a1Q04857 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col6a1Q04857 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col6a1Q04857 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col6a1Q04857 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
Col6a1Q04857 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col6a1Q04857 AC119177.1-201ENSMUST00000227647 1332 ntBASIC16.94■□□□□ 0.3
Col6a1Q04857 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Col6a1Q04857 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Col6a1Q04857 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Col6a1Q04857 Nudt18-203ENSMUST00000228768 1578 ntBASIC16.94■□□□□ 0.3
Col6a1Q04857 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC16.93■□□□□ 0.3
Col6a1Q04857 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col6a1Q04857 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col6a1Q04857 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col6a1Q04857 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC16.93■□□□□ 0.3
Col6a1Q04857 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Col6a1Q04857 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col6a1Q04857 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Col6a1Q04857 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col6a1Q04857 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Col6a1Q04857 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col6a1Q04857 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col6a1Q04857 Gm10253-201ENSMUST00000194270 940 ntBASIC16.93■□□□□ 0.3
Col6a1Q04857 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col6a1Q04857 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Col6a1Q04857 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col6a1Q04857 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col6a1Q04857 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col6a1Q04857 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col6a1Q04857 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col6a1Q04857 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col6a1Q04857 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col6a1Q04857 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col6a1Q04857 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col6a1Q04857 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col6a1Q04857 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Col6a1Q04857 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Col6a1Q04857 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC16.92■□□□□ 0.3
Col6a1Q04857 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col6a1Q04857 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col6a1Q04857 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC16.92■□□□□ 0.3
Col6a1Q04857 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col6a1Q04857 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Col6a1Q04857 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col6a1Q04857 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC16.92■□□□□ 0.3
Col6a1Q04857 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col6a1Q04857 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col6a1Q04857 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Col6a1Q04857 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col6a1Q04857 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col6a1Q04857 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
Col6a1Q04857 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC16.92■□□□□ 0.3
Col6a1Q04857 AC159621.2-201ENSMUST00000223519 1326 ntBASIC16.92■□□□□ 0.3
Col6a1Q04857 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
Col6a1Q04857 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col6a1Q04857 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col6a1Q04857 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Col6a1Q04857 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms