Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Shmt1P50431 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Shmt1P50431 Gm27702-201ENSMUST00000184512 56 ntBASIC16.21■□□□□ 0.19
Shmt1P50431 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Shmt1P50431 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Shmt1P50431 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Shmt1P50431 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Shmt1P50431 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Shmt1P50431 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Shmt1P50431 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Shmt1P50431 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC16.21■□□□□ 0.19
Shmt1P50431 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.18
Shmt1P50431 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Shmt1P50431 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Shmt1P50431 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Shmt1P50431 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Shmt1P50431 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Shmt1P50431 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Shmt1P50431 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Shmt1P50431 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Shmt1P50431 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Shmt1P50431 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Shmt1P50431 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC16.2■□□□□ 0.18
Shmt1P50431 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
Shmt1P50431 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC16.2■□□□□ 0.18
Shmt1P50431 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC16.2■□□□□ 0.18
Shmt1P50431 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC16.2■□□□□ 0.18
Shmt1P50431 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Shmt1P50431 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Shmt1P50431 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Shmt1P50431 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Shmt1P50431 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC16.2■□□□□ 0.18
Shmt1P50431 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Shmt1P50431 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Shmt1P50431 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Shmt1P50431 Gm45293-201ENSMUST00000209754 1812 ntBASIC16.19■□□□□ 0.18
Shmt1P50431 Gm27528-202ENSMUST00000222916 2012 ntBASIC16.19■□□□□ 0.18
Shmt1P50431 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Shmt1P50431 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Shmt1P50431 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Shmt1P50431 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
Shmt1P50431 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Shmt1P50431 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Shmt1P50431 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC16.19■□□□□ 0.18
Shmt1P50431 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Shmt1P50431 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Shmt1P50431 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC16.19■□□□□ 0.18
Shmt1P50431 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC16.19■□□□□ 0.18
Shmt1P50431 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC16.19■□□□□ 0.18
Shmt1P50431 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Shmt1P50431 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC16.19■□□□□ 0.18
Shmt1P50431 Gm17968-201ENSMUST00000194902 784 ntBASIC16.19■□□□□ 0.18
Shmt1P50431 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Shmt1P50431 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC16.19■□□□□ 0.18
Shmt1P50431 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC16.19■□□□□ 0.18
Shmt1P50431 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Shmt1P50431 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Shmt1P50431 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Shmt1P50431 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Shmt1P50431 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Shmt1P50431 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Shmt1P50431 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
Shmt1P50431 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC16.18■□□□□ 0.18
Shmt1P50431 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Shmt1P50431 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Shmt1P50431 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Shmt1P50431 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Shmt1P50431 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Shmt1P50431 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Shmt1P50431 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Shmt1P50431 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Shmt1P50431 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Shmt1P50431 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Shmt1P50431 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
Shmt1P50431 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Shmt1P50431 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Shmt1P50431 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC16.18■□□□□ 0.18
Shmt1P50431 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Shmt1P50431 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Shmt1P50431 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Shmt1P50431 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Shmt1P50431 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Shmt1P50431 AC130669.1-201ENSMUST00000228537 1672 ntBASIC16.18■□□□□ 0.18
Shmt1P50431 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Shmt1P50431 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Shmt1P50431 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Shmt1P50431 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Shmt1P50431 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Shmt1P50431 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Shmt1P50431 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Shmt1P50431 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Shmt1P50431 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Shmt1P50431 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Shmt1P50431 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Shmt1P50431 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
Shmt1P50431 Gm6736-201ENSMUST00000166583 948 ntBASIC16.17■□□□□ 0.18
Shmt1P50431 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
Shmt1P50431 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Shmt1P50431 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC16.17■□□□□ 0.18
Shmt1P50431 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms