Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col18a1P39061 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col18a1P39061 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col18a1P39061 Mir125a-201ENSMUST00000083545 68 ntBASIC20.15■□□□□ 0.82
Col18a1P39061 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC20.15■□□□□ 0.82
Col18a1P39061 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Col18a1P39061 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Col18a1P39061 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC20.14■□□□□ 0.82
Col18a1P39061 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Col18a1P39061 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC20.14■□□□□ 0.81
Col18a1P39061 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC20.14■□□□□ 0.81
Col18a1P39061 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC20.14■□□□□ 0.81
Col18a1P39061 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Col18a1P39061 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC20.14■□□□□ 0.81
Col18a1P39061 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Col18a1P39061 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
Col18a1P39061 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Col18a1P39061 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Col18a1P39061 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC20.13■□□□□ 0.81
Col18a1P39061 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col18a1P39061 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC20.13■□□□□ 0.81
Col18a1P39061 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
Col18a1P39061 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Col18a1P39061 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC20.13■□□□□ 0.81
Col18a1P39061 AC165157.4-201ENSMUST00000220587 139 ntBASIC20.13■□□□□ 0.81
Col18a1P39061 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col18a1P39061 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col18a1P39061 Gm44832-201ENSMUST00000208849 2303 ntBASIC20.13■□□□□ 0.81
Col18a1P39061 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Col18a1P39061 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col18a1P39061 Gm37811-201ENSMUST00000192416 2601 ntBASIC20.13■□□□□ 0.81
Col18a1P39061 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col18a1P39061 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col18a1P39061 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Col18a1P39061 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col18a1P39061 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col18a1P39061 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC20.13■□□□□ 0.81
Col18a1P39061 Gm18827-201ENSMUST00000188341 790 ntBASIC20.13■□□□□ 0.81
Col18a1P39061 Gm37424-201ENSMUST00000191727 561 ntBASIC20.13■□□□□ 0.81
Col18a1P39061 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col18a1P39061 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC20.13■□□□□ 0.81
Col18a1P39061 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Col18a1P39061 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col18a1P39061 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col18a1P39061 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col18a1P39061 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col18a1P39061 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col18a1P39061 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Col18a1P39061 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col18a1P39061 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
Col18a1P39061 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col18a1P39061 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC20.12■□□□□ 0.81
Col18a1P39061 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col18a1P39061 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col18a1P39061 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Col18a1P39061 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Col18a1P39061 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col18a1P39061 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col18a1P39061 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Col18a1P39061 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Col18a1P39061 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Col18a1P39061 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC20.11■□□□□ 0.81
Col18a1P39061 Gm13464-201ENSMUST00000119418 935 ntBASIC20.11■□□□□ 0.81
Col18a1P39061 Gm14660-201ENSMUST00000119809 575 ntBASIC20.11■□□□□ 0.81
Col18a1P39061 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col18a1P39061 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC20.11■□□□□ 0.81
Col18a1P39061 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col18a1P39061 Gm8399-201ENSMUST00000082300 1117 ntBASIC20.11■□□□□ 0.81
Col18a1P39061 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC20.11■□□□□ 0.81
Col18a1P39061 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Col18a1P39061 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC20.11■□□□□ 0.81
Col18a1P39061 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col18a1P39061 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col18a1P39061 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col18a1P39061 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col18a1P39061 Tfap2a-203ENSMUST00000223869 2037 ntBASIC20.11■□□□□ 0.81
Col18a1P39061 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Col18a1P39061 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC20.11■□□□□ 0.81
Col18a1P39061 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Col18a1P39061 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col18a1P39061 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col18a1P39061 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Col18a1P39061 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Col18a1P39061 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC20.1■□□□□ 0.81
Col18a1P39061 Gm5763-201ENSMUST00000155951 1530 ntBASIC20.1■□□□□ 0.81
Col18a1P39061 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC20.1■□□□□ 0.81
Col18a1P39061 AC154527.2-201ENSMUST00000225256 1466 ntBASIC20.1■□□□□ 0.81
Col18a1P39061 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
Col18a1P39061 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col18a1P39061 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col18a1P39061 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col18a1P39061 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col18a1P39061 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC20.1■□□□□ 0.81
Col18a1P39061 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col18a1P39061 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col18a1P39061 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC20.09■□□□□ 0.81
Col18a1P39061 Gm27839-201ENSMUST00000184242 106 ntBASIC20.09■□□□□ 0.81
Col18a1P39061 AA619741-201ENSMUST00000195095 646 ntBASIC20.09■□□□□ 0.81
Col18a1P39061 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col18a1P39061 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC20.09■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 65.3 ms