Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC12.64□□□□□ -0.39
Sdc1P18828 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc1P18828 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC12.63□□□□□ -0.39
Sdc1P18828 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc1P18828 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc1P18828 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc1P18828 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc1P18828 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc1P18828 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc1P18828 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc1P18828 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc1P18828 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc1P18828 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC12.63□□□□□ -0.39
Sdc1P18828 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC12.63□□□□□ -0.39
Sdc1P18828 Gm12896-201ENSMUST00000118430 226 ntBASIC12.63□□□□□ -0.39
Sdc1P18828 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc1P18828 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc1P18828 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC12.63□□□□□ -0.39
Sdc1P18828 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC12.63□□□□□ -0.39
Sdc1P18828 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc1P18828 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc1P18828 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc1P18828 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
Sdc1P18828 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc1P18828 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC12.63□□□□□ -0.39
Sdc1P18828 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc1P18828 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Sdc1P18828 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc1P18828 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
Sdc1P18828 CT025610.1-201ENSMUST00000224552 1786 ntBASIC12.63□□□□□ -0.39
Sdc1P18828 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Sdc1P18828 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc1P18828 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc1P18828 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc1P18828 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc1P18828 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc1P18828 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc1P18828 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Sdc1P18828 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sdc1P18828 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC12.62□□□□□ -0.39
Sdc1P18828 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc1P18828 Gm15442-201ENSMUST00000117905 1527 ntBASIC12.62□□□□□ -0.39
Sdc1P18828 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc1P18828 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc1P18828 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc1P18828 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc1P18828 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc1P18828 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc1P18828 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc1P18828 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc1P18828 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc1P18828 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc1P18828 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC12.62□□□□□ -0.39
Sdc1P18828 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc1P18828 Gm6858-201ENSMUST00000208582 1468 ntBASIC12.62□□□□□ -0.39
Sdc1P18828 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc1P18828 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC12.62□□□□□ -0.39
Sdc1P18828 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC12.62□□□□□ -0.39
Sdc1P18828 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc1P18828 Gm43183-201ENSMUST00000200632 547 ntBASIC12.62□□□□□ -0.39
Sdc1P18828 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc1P18828 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Sdc1P18828 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc1P18828 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc1P18828 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc1P18828 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC12.62□□□□□ -0.39
Sdc1P18828 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc1P18828 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Sdc1P18828 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc1P18828 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Sdc1P18828 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc1P18828 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sdc1P18828 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Sdc1P18828 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Sdc1P18828 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Sdc1P18828 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sdc1P18828 AC162938.1-201ENSMUST00000213140 2323 ntBASIC12.61□□□□□ -0.39
Sdc1P18828 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sdc1P18828 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Sdc1P18828 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Sdc1P18828 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Sdc1P18828 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sdc1P18828 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sdc1P18828 Gm9856-201ENSMUST00000217077 2578 ntBASIC12.61□□□□□ -0.39
Sdc1P18828 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Sdc1P18828 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC12.61□□□□□ -0.39
Sdc1P18828 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Sdc1P18828 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Sdc1P18828 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Sdc1P18828 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC12.61□□□□□ -0.39
Sdc1P18828 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Sdc1P18828 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Sdc1P18828 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC12.61□□□□□ -0.39
Sdc1P18828 Gm30437-201ENSMUST00000206086 1201 ntBASIC12.61□□□□□ -0.39
Sdc1P18828 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sdc1P18828 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Sdc1P18828 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sdc1P18828 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sdc1P18828 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
Sdc1P18828 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms