Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RaraP11416 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
RaraP11416 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
RaraP11416 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
RaraP11416 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RaraP11416 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RaraP11416 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
RaraP11416 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RaraP11416 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RaraP11416 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RaraP11416 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RaraP11416 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
RaraP11416 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RaraP11416 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RaraP11416 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RaraP11416 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
RaraP11416 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
RaraP11416 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC16.61■□□□□ 0.25
RaraP11416 Gm7284-201ENSMUST00000131667 944 ntBASIC16.61■□□□□ 0.25
RaraP11416 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RaraP11416 Gm7286-201ENSMUST00000182691 1007 ntBASIC16.61■□□□□ 0.25
RaraP11416 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
RaraP11416 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RaraP11416 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RaraP11416 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RaraP11416 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
RaraP11416 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RaraP11416 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
RaraP11416 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
RaraP11416 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC16.6■□□□□ 0.25
RaraP11416 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RaraP11416 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RaraP11416 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
RaraP11416 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
RaraP11416 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RaraP11416 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC16.6■□□□□ 0.25
RaraP11416 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RaraP11416 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC16.6■□□□□ 0.25
RaraP11416 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RaraP11416 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC16.6■□□□□ 0.25
RaraP11416 AC108846.1-201ENSMUST00000214531 513 ntBASIC16.6■□□□□ 0.25
RaraP11416 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RaraP11416 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RaraP11416 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RaraP11416 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
RaraP11416 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RaraP11416 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
RaraP11416 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
RaraP11416 Gm5357-201ENSMUST00000212720 1924 ntBASIC16.6■□□□□ 0.25
RaraP11416 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RaraP11416 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
RaraP11416 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RaraP11416 Gm10605-202ENSMUST00000183019 3198 ntBASIC16.6■□□□□ 0.25
RaraP11416 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RaraP11416 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RaraP11416 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RaraP11416 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RaraP11416 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC16.59■□□□□ 0.25
RaraP11416 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RaraP11416 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
RaraP11416 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
RaraP11416 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
RaraP11416 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
RaraP11416 Gm12497-201ENSMUST00000138778 237 ntBASIC16.59■□□□□ 0.25
RaraP11416 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RaraP11416 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
RaraP11416 AC153889.1-201ENSMUST00000219257 330 ntBASIC16.59■□□□□ 0.25
RaraP11416 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RaraP11416 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC16.59■□□□□ 0.25
RaraP11416 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RaraP11416 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC16.59■□□□□ 0.25
RaraP11416 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
RaraP11416 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
RaraP11416 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
RaraP11416 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
RaraP11416 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
RaraP11416 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC16.58■□□□□ 0.25
RaraP11416 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
RaraP11416 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
RaraP11416 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
RaraP11416 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RaraP11416 Gm15372-201ENSMUST00000120729 834 ntBASIC16.58■□□□□ 0.24
RaraP11416 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC16.58■□□□□ 0.24
RaraP11416 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
RaraP11416 Gm30437-201ENSMUST00000206086 1201 ntBASIC16.58■□□□□ 0.24
RaraP11416 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC16.58■□□□□ 0.24
RaraP11416 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
RaraP11416 AC158538.2-201ENSMUST00000225455 906 ntBASIC16.58■□□□□ 0.24
RaraP11416 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RaraP11416 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC16.58■□□□□ 0.24
RaraP11416 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RaraP11416 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RaraP11416 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
RaraP11416 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RaraP11416 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RaraP11416 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RaraP11416 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
RaraP11416 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC16.58■□□□□ 0.24
RaraP11416 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
RaraP11416 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms