Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC17.81■□□□□ 0.44
Col1a1P11087 Gm43072-201ENSMUST00000200283 1671 ntBASIC17.81■□□□□ 0.44
Col1a1P11087 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col1a1P11087 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Col1a1P11087 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col1a1P11087 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col1a1P11087 Asic1-205ENSMUST00000228185 1818 ntBASIC17.8■□□□□ 0.44
Col1a1P11087 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col1a1P11087 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC17.8■□□□□ 0.44
Col1a1P11087 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col1a1P11087 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col1a1P11087 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col1a1P11087 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col1a1P11087 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Col1a1P11087 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col1a1P11087 Gm24543-201ENSMUST00000103867 82 ntBASIC17.8■□□□□ 0.44
Col1a1P11087 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC17.8■□□□□ 0.44
Col1a1P11087 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Col1a1P11087 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC17.8■□□□□ 0.44
Col1a1P11087 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Col1a1P11087 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col1a1P11087 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Col1a1P11087 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col1a1P11087 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Col1a1P11087 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col1a1P11087 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col1a1P11087 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col1a1P11087 Gm10461-201ENSMUST00000202073 4786 ntBASIC17.79■□□□□ 0.44
Col1a1P11087 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col1a1P11087 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col1a1P11087 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col1a1P11087 Gm6473-201ENSMUST00000188572 1210 ntBASIC17.79■□□□□ 0.44
Col1a1P11087 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col1a1P11087 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col1a1P11087 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col1a1P11087 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col1a1P11087 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col1a1P11087 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col1a1P11087 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col1a1P11087 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Col1a1P11087 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col1a1P11087 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col1a1P11087 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC17.79■□□□□ 0.44
Col1a1P11087 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Col1a1P11087 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col1a1P11087 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col1a1P11087 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col1a1P11087 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col1a1P11087 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Col1a1P11087 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC17.78■□□□□ 0.44
Col1a1P11087 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col1a1P11087 Gm5566-201ENSMUST00000116118 459 ntBASIC17.78■□□□□ 0.44
Col1a1P11087 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC17.78■□□□□ 0.44
Col1a1P11087 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col1a1P11087 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Col1a1P11087 AL593843.1-201ENSMUST00000195891 145 ntBASIC17.78■□□□□ 0.44
Col1a1P11087 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Col1a1P11087 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Col1a1P11087 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col1a1P11087 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col1a1P11087 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col1a1P11087 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col1a1P11087 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col1a1P11087 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Col1a1P11087 Gm12859-201ENSMUST00000117834 427 ntBASIC17.77■□□□□ 0.44
Col1a1P11087 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
Col1a1P11087 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC17.77■□□□□ 0.44
Col1a1P11087 Gm18187-201ENSMUST00000196476 984 ntBASIC17.77■□□□□ 0.44
Col1a1P11087 Gm43433-201ENSMUST00000196573 481 ntBASIC17.77■□□□□ 0.44
Col1a1P11087 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col1a1P11087 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Col1a1P11087 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col1a1P11087 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Col1a1P11087 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Col1a1P11087 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Col1a1P11087 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Col1a1P11087 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Col1a1P11087 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col1a1P11087 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
Col1a1P11087 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
Col1a1P11087 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Col1a1P11087 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Col1a1P11087 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Col1a1P11087 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC17.76■□□□□ 0.43
Col1a1P11087 AC164567.1-201ENSMUST00000219185 960 ntBASIC17.76■□□□□ 0.43
Col1a1P11087 AC090659.2-201ENSMUST00000225378 1186 ntBASIC17.76■□□□□ 0.43
Col1a1P11087 AC132467.2-202ENSMUST00000227726 559 ntBASIC17.76■□□□□ 0.43
Col1a1P11087 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Col1a1P11087 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col1a1P11087 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Col1a1P11087 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Col1a1P11087 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Col1a1P11087 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col1a1P11087 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col1a1P11087 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col1a1P11087 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col1a1P11087 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col1a1P11087 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col1a1P11087 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col1a1P11087 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 56.6 ms