Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Trim39Q9ESN2 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim39Q9ESN2 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim39Q9ESN2 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim39Q9ESN2 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trim39Q9ESN2 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim39Q9ESN2 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim39Q9ESN2 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC14.42□□□□□ -0.1
Trim39Q9ESN2 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
Trim39Q9ESN2 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Trim39Q9ESN2 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim39Q9ESN2 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim39Q9ESN2 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Trim39Q9ESN2 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim39Q9ESN2 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim39Q9ESN2 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim39Q9ESN2 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Trim39Q9ESN2 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim39Q9ESN2 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim39Q9ESN2 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim39Q9ESN2 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trim39Q9ESN2 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC14.42□□□□□ -0.1
Trim39Q9ESN2 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim39Q9ESN2 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Trim39Q9ESN2 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim39Q9ESN2 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Trim39Q9ESN2 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim39Q9ESN2 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim39Q9ESN2 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim39Q9ESN2 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim39Q9ESN2 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim39Q9ESN2 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim39Q9ESN2 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim39Q9ESN2 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim39Q9ESN2 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim39Q9ESN2 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Trim39Q9ESN2 AC153937.1-201ENSMUST00000218734 412 ntBASIC14.41□□□□□ -0.1
Trim39Q9ESN2 AC154471.1-201ENSMUST00000224418 436 ntBASIC14.41□□□□□ -0.1
Trim39Q9ESN2 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim39Q9ESN2 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC14.41□□□□□ -0.1
Trim39Q9ESN2 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim39Q9ESN2 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim39Q9ESN2 AC132265.1-201ENSMUST00000219233 1665 ntBASIC14.41□□□□□ -0.1
Trim39Q9ESN2 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC14.41□□□□□ -0.1
Trim39Q9ESN2 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim39Q9ESN2 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Trim39Q9ESN2 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
Trim39Q9ESN2 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim39Q9ESN2 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim39Q9ESN2 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim39Q9ESN2 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim39Q9ESN2 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Trim39Q9ESN2 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Trim39Q9ESN2 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim39Q9ESN2 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Trim39Q9ESN2 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Trim39Q9ESN2 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Trim39Q9ESN2 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim39Q9ESN2 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim39Q9ESN2 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Trim39Q9ESN2 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC14.4□□□□□ -0.1
Trim39Q9ESN2 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC14.4□□□□□ -0.1
Trim39Q9ESN2 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trim39Q9ESN2 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trim39Q9ESN2 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim39Q9ESN2 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trim39Q9ESN2 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim39Q9ESN2 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim39Q9ESN2 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim39Q9ESN2 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trim39Q9ESN2 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
Trim39Q9ESN2 Gm27704-201ENSMUST00000185094 107 ntBASIC14.4□□□□□ -0.1
Trim39Q9ESN2 AC114585.2-202ENSMUST00000228094 426 ntBASIC14.4□□□□□ -0.1
Trim39Q9ESN2 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim39Q9ESN2 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim39Q9ESN2 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim39Q9ESN2 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
Trim39Q9ESN2 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
Trim39Q9ESN2 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim39Q9ESN2 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim39Q9ESN2 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC14.4□□□□□ -0.1
Trim39Q9ESN2 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trim39Q9ESN2 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim39Q9ESN2 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim39Q9ESN2 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim39Q9ESN2 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.11
Trim39Q9ESN2 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Trim39Q9ESN2 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim39Q9ESN2 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Trim39Q9ESN2 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim39Q9ESN2 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim39Q9ESN2 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim39Q9ESN2 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Trim39Q9ESN2 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Trim39Q9ESN2 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Trim39Q9ESN2 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim39Q9ESN2 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC14.39□□□□□ -0.11
Trim39Q9ESN2 Gm14859-201ENSMUST00000117752 357 ntBASIC14.39□□□□□ -0.11
Trim39Q9ESN2 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim39Q9ESN2 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC14.39□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms