Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Cacna1g-203ENSMUST00000103166 8104 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Wnt10b-206ENSMUST00000228546 2709 ntBASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdc40Q9DC48 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cdc40Q9DC48 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Cdc40Q9DC48 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cdc40Q9DC48 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cdc40Q9DC48 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cdc40Q9DC48 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cdc40Q9DC48 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.12
Cdc40Q9DC48 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.12
Cdc40Q9DC48 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Cdc40Q9DC48 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cdc40Q9DC48 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cdc40Q9DC48 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Cdc40Q9DC48 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC14.27□□□□□ -0.12
Cdc40Q9DC48 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cdc40Q9DC48 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cdc40Q9DC48 Gm12260-201ENSMUST00000122447 411 ntBASIC14.27□□□□□ -0.13
Cdc40Q9DC48 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
Cdc40Q9DC48 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC14.27□□□□□ -0.13
Cdc40Q9DC48 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdc40Q9DC48 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdc40Q9DC48 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Cdc40Q9DC48 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC14.27□□□□□ -0.13
Cdc40Q9DC48 Gm6089-201ENSMUST00000197666 938 ntBASIC14.27□□□□□ -0.13
Cdc40Q9DC48 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Cdc40Q9DC48 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC14.27□□□□□ -0.13
Cdc40Q9DC48 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC14.27□□□□□ -0.13
Cdc40Q9DC48 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdc40Q9DC48 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdc40Q9DC48 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdc40Q9DC48 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdc40Q9DC48 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdc40Q9DC48 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdc40Q9DC48 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdc40Q9DC48 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdc40Q9DC48 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Cdc40Q9DC48 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdc40Q9DC48 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdc40Q9DC48 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdc40Q9DC48 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdc40Q9DC48 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdc40Q9DC48 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.13
Cdc40Q9DC48 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdc40Q9DC48 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdc40Q9DC48 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdc40Q9DC48 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cdc40Q9DC48 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC14.26□□□□□ -0.13
Cdc40Q9DC48 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC14.26□□□□□ -0.13
Cdc40Q9DC48 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdc40Q9DC48 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Cdc40Q9DC48 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Cdc40Q9DC48 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Cdc40Q9DC48 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Cdc40Q9DC48 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cdc40Q9DC48 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms