Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 AC132265.1-201ENSMUST00000219233 1665 ntBASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ddx28Q9CWT6 Zfp553-202ENSMUST00000106312 3342 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Rbfox2-206ENSMUST00000227314 1810 ntBASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Gm29518-201ENSMUST00000190858 372 ntBASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Gm21362-201ENSMUST00000194272 928 ntBASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Gm17808-201ENSMUST00000200859 894 ntBASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 CT009713.7-201ENSMUST00000224689 571 ntBASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Ddx28Q9CWT6 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Gm14859-201ENSMUST00000117752 357 ntBASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Gm33142-201ENSMUST00000193913 867 ntBASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Gm45328-201ENSMUST00000210942 917 ntBASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 42.2 ms