Protein–RNA interactions for Protein: Q5NCC9

Trim58, E3 ubiquitin-protein ligase TRIM58, mousemouse

Predictions only

Length 485 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim58Q5NCC9 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim58Q5NCC9 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim58Q5NCC9 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Trim58Q5NCC9 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim58Q5NCC9 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Trim58Q5NCC9 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC19.47■□□□□ 0.71
Trim58Q5NCC9 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC19.47■□□□□ 0.71
Trim58Q5NCC9 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim58Q5NCC9 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim58Q5NCC9 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Trim58Q5NCC9 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Trim58Q5NCC9 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim58Q5NCC9 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Trim58Q5NCC9 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim58Q5NCC9 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Trim58Q5NCC9 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Trim58Q5NCC9 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim58Q5NCC9 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim58Q5NCC9 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim58Q5NCC9 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim58Q5NCC9 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim58Q5NCC9 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim58Q5NCC9 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim58Q5NCC9 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim58Q5NCC9 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim58Q5NCC9 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC19.46■□□□□ 0.71
Trim58Q5NCC9 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Trim58Q5NCC9 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim58Q5NCC9 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim58Q5NCC9 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Trim58Q5NCC9 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim58Q5NCC9 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim58Q5NCC9 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim58Q5NCC9 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Trim58Q5NCC9 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Trim58Q5NCC9 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC19.45■□□□□ 0.7
Trim58Q5NCC9 Gm13418-201ENSMUST00000119097 944 ntBASIC19.45■□□□□ 0.7
Trim58Q5NCC9 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC19.45■□□□□ 0.7
Trim58Q5NCC9 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Trim58Q5NCC9 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC19.45■□□□□ 0.7
Trim58Q5NCC9 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC19.45■□□□□ 0.7
Trim58Q5NCC9 Gm10459-201ENSMUST00000202708 1155 ntBASIC19.45■□□□□ 0.7
Trim58Q5NCC9 Gm30437-201ENSMUST00000206086 1201 ntBASIC19.45■□□□□ 0.7
Trim58Q5NCC9 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC19.45■□□□□ 0.7
Trim58Q5NCC9 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim58Q5NCC9 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Trim58Q5NCC9 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC19.45■□□□□ 0.7
Trim58Q5NCC9 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim58Q5NCC9 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim58Q5NCC9 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC19.45■□□□□ 0.7
Trim58Q5NCC9 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Trim58Q5NCC9 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
Trim58Q5NCC9 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Trim58Q5NCC9 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim58Q5NCC9 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim58Q5NCC9 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim58Q5NCC9 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim58Q5NCC9 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC19.44■□□□□ 0.7
Trim58Q5NCC9 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Trim58Q5NCC9 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim58Q5NCC9 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC19.44■□□□□ 0.7
Trim58Q5NCC9 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC19.44■□□□□ 0.7
Trim58Q5NCC9 Gm27459-201ENSMUST00000184860 107 ntBASIC19.44■□□□□ 0.7
Trim58Q5NCC9 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC19.44■□□□□ 0.7
Trim58Q5NCC9 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim58Q5NCC9 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim58Q5NCC9 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim58Q5NCC9 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim58Q5NCC9 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Trim58Q5NCC9 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim58Q5NCC9 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim58Q5NCC9 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Trim58Q5NCC9 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim58Q5NCC9 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Trim58Q5NCC9 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Trim58Q5NCC9 AC157650.3-201ENSMUST00000225058 1476 ntBASIC19.43■□□□□ 0.7
Trim58Q5NCC9 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC19.43■□□□□ 0.7
Trim58Q5NCC9 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC19.43■□□□□ 0.7
Trim58Q5NCC9 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim58Q5NCC9 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim58Q5NCC9 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim58Q5NCC9 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC19.43■□□□□ 0.7
Trim58Q5NCC9 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Trim58Q5NCC9 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim58Q5NCC9 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC19.43■□□□□ 0.7
Trim58Q5NCC9 Gm2308-201ENSMUST00000166539 1004 ntBASIC19.43■□□□□ 0.7
Trim58Q5NCC9 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC19.43■□□□□ 0.7
Trim58Q5NCC9 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Trim58Q5NCC9 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC19.43■□□□□ 0.7
Trim58Q5NCC9 Gm43347-201ENSMUST00000200226 580 ntBASIC19.43■□□□□ 0.7
Trim58Q5NCC9 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC19.43■□□□□ 0.7
Trim58Q5NCC9 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim58Q5NCC9 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Trim58Q5NCC9 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Trim58Q5NCC9 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim58Q5NCC9 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Trim58Q5NCC9 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim58Q5NCC9 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Trim58Q5NCC9 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim58Q5NCC9 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms